View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13542_low_2 (Length: 432)
Name: NF13542_low_2
Description: NF13542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13542_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 20 - 421
Target Start/End: Complemental strand, 35044786 - 35044385
Alignment:
| Q |
20 |
ttaacttcaaggatataaagactgacataccagacacgtagttttgatagtggttccagcatcacgaccatcaatttcttgatcatcaacagtggagata |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
35044786 |
ttaacttcaaggatataaagactgacataccagacacgtagttttgatagtagttccagcatcacgaccatcaatttcttgatcatcaacagcggagata |
35044687 |
T |
|
| Q |
120 |
ataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044686 |
ataacatccataaagtcacgttcatttccaggaaccctactacgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttct |
35044587 |
T |
|
| Q |
220 |
tcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacgaatcagatataacaaaggaaccacaaagatggaagagctccctaaacgc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35044586 |
tcatttccttctcttttccatccaaatccaaccatcttaaaaacggcaacgaatcagatataacaaaggaaccacaaagatggaagagctctctaaacgc |
35044487 |
T |
|
| Q |
320 |
ttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatcacgtttatcgctatatcaccaaaccatttcttc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35044486 |
ttttcgtatttgtttgttcttttctccttccccgtcaaaacgttctccaaccaccgttctaaacatcacgtttatcgctatatcaccaaaccatttcttc |
35044387 |
T |
|
| Q |
420 |
at |
421 |
Q |
| |
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|| |
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| T |
35044386 |
at |
35044385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 162 - 292
Target Start/End: Complemental strand, 35036513 - 35036383
Alignment:
| Q |
162 |
cgtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaa |
261 |
Q |
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|||||||||||||| | |||| |||||||||| ||||| ||||||||||| ||||||||||| | ||||| |||||||||||||||||||||||| |||| |
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| T |
35036513 |
cgtttgtgttgatcgagccaaacttgaacaaaatcatctaactctttagccgttttcttcatctgcttctgttttccatccaaatccaaccatctaaaaa |
35036414 |
T |
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| Q |
262 |
acggcaacgaatcagatataacaaaggaacc |
292 |
Q |
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|| ||||| |||||||||||||| ||||| |
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| T |
35036413 |
accgcaacatgtcagatataacaaatgaacc |
35036383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 163 - 300
Target Start/End: Complemental strand, 35020313 - 35020176
Alignment:
| Q |
163 |
gtttgtgttgatcaatccaaccttgaacaaactcatccaactctttagcagttttcttcatttccttctcttttccatccaaatccaaccatcttaaaaa |
262 |
Q |
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||||||| ||||||| |||| | |||||| ||||| |||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| ||| | |
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| T |
35020313 |
gtttgtgctgatcaagccaaacacaaacaaagtcatctaactcttttgctgttttcttcatttgcttctgttttccatccaaatccaaccatctcaaata |
35020214 |
T |
|
| Q |
263 |
cggcaacgaatcagatataacaaaggaaccacaaagat |
300 |
Q |
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||| ||| ||||| | |||||| ||||||| ||||| |
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| T |
35020213 |
cggtaacatgtcagaaacaacaaatgaaccactaagat |
35020176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 372 - 421
Target Start/End: Complemental strand, 35036303 - 35036254
Alignment:
| Q |
372 |
accgttctaaacatcacgtttatcgctatatcaccaaaccatttcttcat |
421 |
Q |
| |
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||||||||| |||| ||||| ||||||||||||||||||||||| ||||| |
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| T |
35036303 |
accgttctacacataacgttcatcgctatatcaccaaaccattttttcat |
35036254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 44 - 109
Target Start/End: Complemental strand, 35036634 - 35036569
Alignment:
| Q |
44 |
acataccagacacgtagttttgatagtggttccagcatcacgaccatcaatttcttgatcatcaac |
109 |
Q |
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|||||||||||| || | |||||| ||||| |||||||||||||||| || |||||||||||||| |
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| T |
35036634 |
acataccagacaagttgctttgattgtggtgtcagcatcacgaccatctatatcttgatcatcaac |
35036569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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