View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13542_low_3 (Length: 424)
Name: NF13542_low_3
Description: NF13542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13542_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 235 - 319
Target Start/End: Original strand, 12541275 - 12541359
Alignment:
| Q |
235 |
tgtttcttgttttatattttctctttgattataccttgtcattgtcttgccttgtgacgttaacttcggatggatcttactctta |
319 |
Q |
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| T |
12541275 |
tgtttcttgttttatattttctctttgattatgccttatcattgtcttgccttgtgacattttctttggatggatcttactctta |
12541359 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 12541367 - 12541453
Alignment:
| Q |
74 |
gtaatagaccatacaatataggattgagtttctcatattcatgtttttggctctgatcaaataagtttcctcccatattataaacctag |
162 |
Q |
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| T |
12541367 |
gtaatagaccatacaatctaggattgagtttctcat--tcatgtttttggctatgatcaaataagtttccaacagtattataaacctag |
12541453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 12541335 - 12541364
Alignment:
| Q |
1 |
tttctttggatggatcttactcttatgatt |
30 |
Q |
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| T |
12541335 |
tttctttggatggatcttactcttatgatt |
12541364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 178
Target Start/End: Original strand, 17729807 - 17729860
Alignment:
| Q |
125 |
tctgatcaaataagtttcctcccatattataaacctagagattgccttgaatta |
178 |
Q |
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| T |
17729807 |
tctgatcaaataagtttcatgcagcattataaacctagagattgccttgaatta |
17729860 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 411
Target Start/End: Original strand, 44244233 - 44244294
Alignment:
| Q |
352 |
tatgatcttattgattttgtaatagaccata---caatctaggattgtgtttccaattcatct |
411 |
Q |
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| T |
44244233 |
tatgatcttattgatttt-taatagaccatattacaatctaggattgagtttctcattcatct |
44244294 |
T |
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