View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13542_low_4 (Length: 365)
Name: NF13542_low_4
Description: NF13542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13542_low_4 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 10872950 - 10873302
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10872950 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10873049 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873050 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10873149 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873150 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
10873249 |
T |
|
| Q |
313 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10873250 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
10873302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 10878021 - 10878373
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878021 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10878120 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10878121 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10878220 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10878221 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
10878320 |
T |
|
| Q |
313 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10878321 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
10878373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 10883092 - 10883444
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10883092 |
cacacaccactgatttccctctcccttcaatccagttcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10883191 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10883192 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
10883291 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10883292 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
10883391 |
T |
|
| Q |
313 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10883392 |
atttcaacaaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
10883444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 10867362 - 10867003
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867362 |
cacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10867263 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
10867262 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtacaaa |
10867163 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatg---a |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| | |
|
|
| T |
10867162 |
ttctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaaacaattattcaaatgacta |
10867063 |
T |
|
| Q |
310 |
gtaatttcaac----aaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
365 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10867062 |
gtaatttcaacaaataaaatttaaagtgaaacagaagaaagttcaaaattgaaaattact |
10867003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 13 - 365
Target Start/End: Original strand, 10887007 - 10887366
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10887007 |
cacacaccactgatttccctctcccttcaatccaattcactgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
10887106 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10887107 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaatctagtgtataaa |
10887206 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaat---ga |
309 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| | |
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|
| T |
10887207 |
ttctttcctgccatagtagctttaatactctgtaatcttgcaaatctacttgacctaaataaatattgcagagaaaatcaatcagttatccaaataagta |
10887306 |
T |
|
| Q |
310 |
gtaatttcaac----aaaatttatagtgaaacagaagaaagttcaaaattgaaaattact |
365 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10887307 |
gtaatttcaacaaataaaatttaaagtgaaaccgaagaaagttcaaaattgaaaattact |
10887366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 39676905 - 39676594
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcggg |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
39676905 |
cacaaaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttccagatataccaataacatccatatcagg |
39676806 |
T |
|
| Q |
113 |
aaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccgttgaacaagtgaacctagtgtataaa |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
39676805 |
aaaatcagtttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcatccccattgcatcaccggttgaacaagtgaatctagtgtataaa |
39676706 |
T |
|
| Q |
213 |
ttctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataaatatcgcagagaaaatcaatcacttatccaaatgagta |
312 |
Q |
| |
|
|||||||| || ||||||||||||||| | |||| |||||||||||||||||||||||||| ||||| | | ||||||||| | |||||||||||||| |
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|
| T |
39676705 |
ttctttcctgctatagtagctttaatattttgtaatcttgcaaatctacttgacctaaatatatatccaaaacaaaatcaattaattatccaaatgagtc |
39676606 |
T |
|
| Q |
313 |
atttcaacaaaa |
324 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39676605 |
atttcaacaaaa |
39676594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 10046933 - 10046746
Alignment:
| Q |
87 |
gatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacccg |
186 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
10046933 |
gatataccaataacatccatatcaggaaaatcgctttgaagaaaatcaagtacgttttgtacaccttttgataccatgttcattcccattgcatcaccgg |
10046834 |
T |
|
| Q |
187 |
ttgaacaagtgaacctagtgtataaattctttccagccatagtagctttaatactctgtagtcttgcaaatctacttgacctaaataa |
274 |
Q |
| |
|
||||||| || || ||| |||||||||||||||| ||||| || ||||||||| |||||| ||| ||||||||||||||||| ||||| |
|
|
| T |
10046833 |
ttgaacatgtaaatctaatgtataaattctttcctgccattgttgctttaatattctgtaatctcgcaaatctacttgacctgaataa |
10046746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 10047110 - 10047038
Alignment:
| Q |
13 |
cacagaccactgatttccctctcccttcaatccaattcaccgccgcagctttcttgtccgaacaaaaatttcc |
85 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
10047110 |
cacacaccactgatttccctctcccttcaatccaattcaccgccgcggctttcttatccgaacaaaaatttcc |
10047038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 187
Target Start/End: Complemental strand, 37949567 - 37949453
Alignment:
| Q |
73 |
aacaaaaatttccagatataccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccc |
172 |
Q |
| |
|
|||| ||||| || ||||| |||||||||||||| || || ||||| || |||| |||||||| ||||| || || ||||| || |||||||||||||| |
|
|
| T |
37949567 |
aacagaaattacctgatatgccaataacatccatgtcagggaaatcatttcgaaggaaatcaagaacgttctgcacccctttggagaccatgttcatccc |
37949468 |
T |
|
| Q |
173 |
cattgcatcacccgt |
187 |
Q |
| |
|
||| ||||||||||| |
|
|
| T |
37949467 |
catggcatcacccgt |
37949453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 30708446 - 30708537
Alignment:
| Q |
93 |
ccaataacatccatatcgggaaaatcggtttgaagaaaatcaagtacgttttgtacacctttcgataccatgttcatccccattgcatcacc |
184 |
Q |
| |
|
||||| |||||||| || ||||| || | |||||||||||||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
30708446 |
ccaatgacatccatgtcaggaaagtcactctgaagaaaatcaaggacattttgaacaccttttgacaccatgttcatccccatggcatcacc |
30708537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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