View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13543_high_6 (Length: 227)
Name: NF13543_high_6
Description: NF13543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13543_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 35 - 210
Target Start/End: Complemental strand, 5663378 - 5663203
Alignment:
| Q |
35 |
cacatgattctcataagcagtttatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacataaagatgaagaa |
134 |
Q |
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| T |
5663378 |
cacatgattctcataagcagattatagtaacatgttagcaatatcagcacagaagaaaactattataacaacagtagtataataacagaaagatgaagaa |
5663279 |
T |
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| Q |
135 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtga |
210 |
Q |
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| T |
5663278 |
gttataaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggaggagaatgtga |
5663203 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 11649122 - 11649159
Alignment:
| Q |
139 |
taaaccaaggcagcagaacataactactggctcgtgag |
176 |
Q |
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| T |
11649122 |
taaaccaaggcagcagaacataactgctggctcgtgag |
11649159 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 52131508 - 52131450
Alignment:
| Q |
139 |
taaaccaaggcagcagaacataactactggctcgtgagtaccaaaactgacaggaaatggagga |
202 |
Q |
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||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||| |
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| T |
52131508 |
taaaccaaggcagcagaacataact----tctcgtgagtacc-aaattgacaggaaatggagga |
52131450 |
T |
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