View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13543_low_2 (Length: 515)
Name: NF13543_low_2
Description: NF13543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13543_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Original strand, 37027423 - 37027919
Alignment:
| Q |
6 |
agattcaacattgcacatctttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatac |
105 |
Q |
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| T |
37027423 |
agattcaacattgcacatctttgcctcttgatgctagtttccactcttttccctttgtgtggtaaaccatgcatataaattatatgattatttcatatac |
37027522 |
T |
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| Q |
106 |
taatctatctatgtaactttagttt-----gtgtaataatttataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtag |
200 |
Q |
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| T |
37027523 |
taatctatctatgtaacttcagtttaatttgtgtagtaattaataaaacatatgtaacttttgttaaatttgcagatgctataaatcatggaagaggtag |
37027622 |
T |
|
| Q |
201 |
tagaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccactt |
300 |
Q |
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| T |
37027623 |
tagaagctactccatcaaatcatggaagaaactcaaattttcatcatttggctactcagacttagattcttcatatggtactccttcttctcaaccactt |
37027722 |
T |
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| Q |
301 |
ccacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtccta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027723 |
ccacctttcaattcacttgctccacaacctacctctctaccaccttattcacctgttccaaacccacctcatgatgtttttagaccaccaccaagtccta |
37027822 |
T |
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| Q |
401 |
aaaccgttgtcacaatatcgccgccgccacctccaagccaatcaaaacatgttccaagcccacctaaaagtgttataggcccacctcaagtatactt |
497 |
Q |
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||||| |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027823 |
aaaccattgttacaatgtcgccgccgccacctccaagcccatcaaaacatgttccaagcccacctaaaagtgttataggcccacctcaagtatactt |
37027919 |
T |
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