View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13543_low_4 (Length: 314)
Name: NF13543_low_4
Description: NF13543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13543_low_4 |
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| [»] scaffold0565 (2 HSPs) |
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| [»] scaffold0808 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 4353 - 4197
Alignment:
| Q |
10 |
aacaatatgctaatgtccttcttcaagcatatgctcagcaacttagggtcagactctttttctatatgcattatatgagttagaatccgttaacactagg |
109 |
Q |
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| T |
4353 |
aacaatatgctaatgtccttcttcaagcatatgctcagcaactcagggtcagactctttttctatatgcattatataagttagaatccgttaacactagg |
4254 |
T |
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| Q |
110 |
gttacatcaaatatcaaccgttataatgaattgatctaatggctcatattatgtcac |
166 |
Q |
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| T |
4253 |
gttacaccaaatatcaaccgttataatgaattgatctaatggctcatattatgtcac |
4197 |
T |
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Target: scaffold0565; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 213 - 296
Target Start/End: Complemental strand, 4195 - 4112
Alignment:
| Q |
213 |
ttcaatttttgtgtttgtgattcagattttatataattatggggcaaggaaaatggcgttatttggagttggtcaaataggttg |
296 |
Q |
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| T |
4195 |
ttcaatttttgtgtttgtaattcagattttatataattatggggcaaggaaaatggcgttatttggagttggtcaaataggttg |
4112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 216 - 296
Target Start/End: Original strand, 7615647 - 7615727
Alignment:
| Q |
216 |
aatttttgtgtttgtgattcagattttatataattatggggcaaggaaaatggcgttatttggagttggtcaaataggttg |
296 |
Q |
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| T |
7615647 |
aattgttgtgtttgtgacttagattttgtataactatggagcaaggaaaatggctttatttgggattggtcaaataggttg |
7615727 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 165
Target Start/End: Complemental strand, 21723432 - 21723378
Alignment:
| Q |
111 |
ttacatcaaatatcaaccgttataatgaattgatctaatggctcatattatgtca |
165 |
Q |
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| T |
21723432 |
ttacatcaaatctcaaccgttgtaattaattgatctaagagttcatattatgtca |
21723378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 1614469 - 1614432
Alignment:
| Q |
122 |
atcaaccgttataatgaattgatctaatggctcatatt |
159 |
Q |
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| T |
1614469 |
atcaaccgttataattaattgatccaatggctcatatt |
1614432 |
T |
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Target: scaffold0808 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0808
Description:
Target: scaffold0808; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 5064 - 5012
Alignment:
| Q |
111 |
ttacatcaaatatcaaccgttataatgaattgatctaatggctcatattatgt |
163 |
Q |
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| T |
5064 |
ttacaccaaatcttaaccgttataattatttgatctaatgactcatattatgt |
5012 |
T |
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