View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13543_low_7 (Length: 222)
Name: NF13543_low_7
Description: NF13543
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13543_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 2598026 - 2597837
Alignment:
| Q |
15 |
gatttgtatgggaagtttgtggcatctgagaaacagtattgtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatg |
114 |
Q |
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| T |
2598026 |
gatttgtatgggaaatttgtggcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcaatatgaagatg |
2597927 |
T |
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| Q |
115 |
aagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggt |
205 |
Q |
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| T |
2597926 |
aagtgaggaaaaatctgttgaattatga-ttatggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggt |
2597837 |
T |
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Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 2292875 - 2292685
Alignment:
| Q |
15 |
gatttgtatgggaagtttgtggcatctgagaaacagtattgtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatg |
114 |
Q |
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||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
2292875 |
gatttgtatcggaagtttgtggcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatg |
2292776 |
T |
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| Q |
115 |
aagtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggt |
205 |
Q |
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||||||||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||| ||||||||||||||||||| |||||| |
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| T |
2292775 |
aagtgaggaaaaatccgttgaattatgattcatggtttgattatataagattggaagagagtgttgggaataaggaaagaactagggaggt |
2292685 |
T |
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Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 17 - 205
Target Start/End: Original strand, 34788321 - 34788509
Alignment:
| Q |
17 |
tttgtatgggaagtttgtggcatctgagaaacagtattgtgatagggaagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaa |
116 |
Q |
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||||||| ||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
34788321 |
tttgtatcggaagtttgcagcatttgagaaacagtatggtgatagggaagggattgaggatgctattgttgggaagagaaggtttcagtatgaagatgaa |
34788420 |
T |
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| Q |
117 |
gtgaggaaaaatctgttgaattatgatttgtggtttgattatataagatggaaagagagtgtcgggaataaggaaagaactatggaggt |
205 |
Q |
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|| | |||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |||||| |
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| T |
34788421 |
gttatgaaaaatccattgaattatgatttgtggtttgattatataagattggaagagagtgtcgggaataaggaaagaactagggaggt |
34788509 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 24602074 - 24602171
Alignment:
| Q |
64 |
aagggattgaggatgctatggttgggaagagaaggtttcaatatgaagatgaagtgaggaaaaatctgttgaattatgatttgtggtttgattatata |
161 |
Q |
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|||||||| | |||||||| |||||||||||||||||||| | ||||||||| ||||| ||||| ||||||||||||| ||||||||||||||| |
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| T |
24602074 |
aagggattaaagatgctattgttgggaagagaaggtttcagtccaaagatgaagcgaggataaatcgcttgaattatgattcttggtttgattatata |
24602171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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