View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13544_high_5 (Length: 347)
Name: NF13544_high_5
Description: NF13544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13544_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 75 - 337
Target Start/End: Original strand, 42928309 - 42928571
Alignment:
| Q |
75 |
gcatcttctctatttcatgtaagcactttaatatctctttatttgttatggattgtttgtttaggtgtcagtcttcatttcttgttgaaggcttccacaa |
174 |
Q |
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| T |
42928309 |
gcatcttctctatttcatgtaagcactttaatatctctttatttgttatggattgtttgtttaggtatcagtcttcatttcttgttgaaggctgccacaa |
42928408 |
T |
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| Q |
175 |
ctttgttgagctaagaagacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctagttcta |
274 |
Q |
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| T |
42928409 |
ctttgttgagctaagaagacaggcaagtcattttctaccttgcactgccattttgagattttctactattgtattagaacatcaaaattacctggttcta |
42928508 |
T |
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| Q |
275 |
taattggtacattgttaatgtatagaaatgaaattgtagttctaattatagcgatgatgtcca |
337 |
Q |
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| T |
42928509 |
taatgggtacattgttaatgtatagaaatgaaattgtagttctaattatagctatgatgtcca |
42928571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 42928272 - 42928308
Alignment:
| Q |
20 |
atccagtgaattcctttagaatttgtggcatcatgac |
56 |
Q |
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| T |
42928272 |
atccagtgaattcctttagaatttgtggcattatgac |
42928308 |
T |
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