View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13544_low_3 (Length: 431)
Name: NF13544_low_3
Description: NF13544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13544_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 32741303 - 32741148
Alignment:
| Q |
19 |
aaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagatatcgatgatggagatgttagtagtgatgatggtgattcaattataggcaca |
118 |
Q |
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| T |
32741303 |
aaagggtgtagtggcggatgaaattgaaggcgatgttggtgaagtagacatcgatggtggagatgttagtagtgatgatggtgatttaattaaaggcaca |
32741204 |
T |
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| Q |
119 |
cgcttttatgatagtgaagaagagaggatggctgcggttgatgatgggtttgataa |
174 |
Q |
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| T |
32741203 |
cgctttgatgatagtgaagaagagaagatggctgcggttgatgatgggtttgataa |
32741148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 265 - 416
Target Start/End: Complemental strand, 32733862 - 32733717
Alignment:
| Q |
265 |
cttcaaacctacttgagcaacacgaggacacacaaaacccctaaaacccacgcatagaaatagaaagaagaaaaannnnnnnnnnnnnnnnngcaaacgc |
364 |
Q |
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| T |
32733862 |
cttcaaacttacttgagcaacacgagtacacacaaaacccttaaaacccacgcatagaaatagaaagaagaaaaa------acacacacacagcaaacgc |
32733769 |
T |
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| Q |
365 |
aactcttcttcaacctataggcattcttcaccctaggcaacaacacactttt |
416 |
Q |
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| T |
32733768 |
aactcttcttcaacctataggcattcttcaccctaggcaacaacacactttt |
32733717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 233
Target Start/End: Complemental strand, 32733922 - 32733861
Alignment:
| Q |
171 |
ataaaaatttcacacaaacgcaacggtagaaatgggccgggtaaaaagcggagtaactttact |
233 |
Q |
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| T |
32733922 |
ataaaaatttcacacaaacgcaacggtagaaatggg-cgggtaaaaagctcagtaactttact |
32733861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 19 - 172
Target Start/End: Complemental strand, 11119599 - 11119446
Alignment:
| Q |
19 |
aaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagatatcgatgatggagatgttagtagtgatgatggtgattcaattataggcaca |
118 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
11119599 |
aaagggtgtagtggcggatgaagttgaaggcaatgttggtgaagcagacaacgatgatggagatgttagtagtgatgatggtgattcaatcaaaggcaca |
11119500 |
T |
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| Q |
119 |
cgcttttatgatagtgaagaagagaggatggctgcggttgatgatgggtttgat |
172 |
Q |
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| T |
11119499 |
cactttaatgacagtgaagaagagaggatggctggggttgatgataggtttgat |
11119446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 12206108 - 12205970
Alignment:
| Q |
19 |
aaagggtgtagtggcggatgaaattgaaggcaatgttggtgaagcagatatcgatgatggagatgttagtagtgatgatggtgattcaattataggcaca |
118 |
Q |
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| T |
12206108 |
aaagggtgtagtggcggattaagttgaaggcaatgttggtgaagcagacagtgatgatgaagatgttagtagtgatgatggtgattcaattaaaggcgca |
12206009 |
T |
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| Q |
119 |
cgcttttatgatagtgaagaagagaggatggctgcggtt |
157 |
Q |
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| T |
12206008 |
cactttaatgatagtgaagaagagaggatggctggggtt |
12205970 |
T |
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