View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13544_low_4 (Length: 376)
Name: NF13544_low_4
Description: NF13544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13544_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Original strand, 54567014 - 54567353
Alignment:
| Q |
11 |
catcatcacttcctatcacattaacatcaaacacttaaagtcgtcaaatatgatggatacttacatattcgatcttggccttcatgattcatcaccaacg |
110 |
Q |
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| T |
54567014 |
catcatcacttcctatcacattaacatcaaacacttaaagtcgtcaaatatgatggatacttacatattcgatcttggccttgatgattcatcaccaacg |
54567113 |
T |
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| Q |
111 |
ttatcggttttagtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaatatgagtaattgtttcaagttgttgcacttttgttttca |
210 |
Q |
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| T |
54567114 |
ttatcggttttagtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaat--gagtaattgtttcaagttgttgcacttttgttttca |
54567211 |
T |
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| Q |
211 |
atcccaacatttagattccaccacaattacattcatgttgatacaaatgttctcttttattggaacaaaagtctataagcacttgttggatgatatccaa |
310 |
Q |
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| T |
54567212 |
atcccaacatttagattccaccacaattacattcatgttgatacaaatgttctcttttattggaacaaaagtctataagcacttgttggatgatatccaa |
54567311 |
T |
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| Q |
311 |
cacatatcattgctttactcttgtcttgtagctttttccttt |
352 |
Q |
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| T |
54567312 |
cacatatcattgctttactcttgtcttgtagctttctccttt |
54567353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 54572004 - 54572176
Alignment:
| Q |
37 |
tcaaacactt-aaagtcgtcaaatatgatggatacttacatattcgatcttggccttcatgattcatcaccaacgttatcggttttagtatttggcatac |
135 |
Q |
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| T |
54572004 |
tcaaacacttcaaagtcatcaaatatgctagatgctcacgtatttcttcttggcgtcgatgattcatcatcaacgttatcaacttaagcatttggcctac |
54572103 |
T |
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| Q |
136 |
aagtcttcacacaacttttggtcatcctccagaaaatatgagt-aattgtttcaagttgttgcacttttgttttc |
209 |
Q |
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| T |
54572104 |
atgtcttcacacaacttttggtcatcctccagaaa--atgagtaaattgtttcaagttgtggcacttttgttttc |
54572176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 122 - 232
Target Start/End: Original strand, 54576628 - 54576735
Alignment:
| Q |
122 |
agtatttggcatacaagtcttcacacaacttttggtcatcctccagaaaatatgagtaattgtttcaagttgttgcacttttgttttcaatcccaacatt |
221 |
Q |
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| T |
54576628 |
agtatttggcatacctgtcttcacaca-cttttgctcatcctccaaaaaat--gagtaattgtttcaggttgttgcacttttgttttcagttctaatagt |
54576724 |
T |
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| Q |
222 |
tagattccacc |
232 |
Q |
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| T |
54576725 |
tagattccacc |
54576735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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