View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13544_low_6 (Length: 261)
Name: NF13544_low_6
Description: NF13544
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13544_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 11119455 - 11119693
Alignment:
| Q |
12 |
atcatcaaccccagccatcctcttttcttccccttcataaaagcgtttgcctataattgaatccccatcctccctactaacacccccatcatcgatccct |
111 |
Q |
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||||||||||||||||||||||| |||||| | |||| |||| || ||||| | |||||||| ||||| || ||||||||| | ||||||||| | || |
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| T |
11119455 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtct |
11119554 |
T |
|
| Q |
112 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| || |
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| T |
11119555 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcacct |
11119654 |
T |
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| Q |
212 |
taggttcaatatacaattcaacatcgcacttcttctcac |
250 |
Q |
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||||||||| ||||||||||||||| |||||||| |||| |
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| T |
11119655 |
taggttcaacatacaattcaacatcacacttcttatcac |
11119693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 12205970 - 12206172
Alignment:
| Q |
18 |
aaccccagccatcctcttttcttccccttcataaaagcgtttgcctataattgaatccccatcctccctactaacacccccatcatcgatccctgcttca |
117 |
Q |
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||||||||||||||||| |||||| | |||| |||| || |||| |||||||||| ||||| || ||||||||| | ||||||| | |||||||| |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
118 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagcttaggtt |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
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| Q |
218 |
caa |
220 |
Q |
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||| |
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| T |
12206170 |
caa |
12206172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 11 - 242
Target Start/End: Original strand, 32741158 - 32741389
Alignment:
| Q |
11 |
catcatcaaccccagccatcctcttttcttccccttcataaaagcgtttgcctataattgaatccccatcctccctactaacacccccatcatcgatccc |
110 |
Q |
| |
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||||||||||| |||||||| ||| |||||| | |||| ||||||| ||||| ||||| |||| ||||| || ||||||||| | ||| ||||||| | |
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| T |
32741158 |
catcatcaaccgcagccatcttctcttcttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtc |
32741257 |
T |
|
| Q |
111 |
tgcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcagc |
210 |
Q |
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| |||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||| | |
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| T |
32741258 |
tacttcaccaacatcgccttcaatttcatccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcacc |
32741357 |
T |
|
| Q |
211 |
ttaggttcaatatacaattcaacatcgcactt |
242 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |
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| T |
32741358 |
ttaggttcaacatacaattcaacatcgcactt |
32741389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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