View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13545_high_5 (Length: 250)
Name: NF13545_high_5
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_high_5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 1035751 - 1035989
Alignment:
| Q |
7 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
106 |
Q |
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| T |
1035751 |
tccaaaaatattgcattggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggat |
1035847 |
T |
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| Q |
107 |
ttgatgaatcatcatgcataagcaggtcacaatctcatcatttcta-cacaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatca |
205 |
Q |
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| T |
1035848 |
ttgatgaatcatcatgcataagcaggtcacaatc---tcatttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatca |
1035944 |
T |
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| Q |
206 |
tagaaaatgtggaccaaacactagagctttcaacgaagacatgaa |
250 |
Q |
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| T |
1035945 |
tagaaaatgtggaccaaacactagagctttcaacgaagacatgaa |
1035989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 6939093 - 6938837
Alignment:
| Q |
7 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
106 |
Q |
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||||| |||||| ||||| ||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||| |
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| T |
6939093 |
tccaaaaatatttcattgacaaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggat |
6938994 |
T |
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| Q |
107 |
ttgatgaatcatcatgcataagcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagta |
193 |
Q |
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| T |
6938993 |
ttgatgaagcatcatgtgtaagcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaata |
6938894 |
T |
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| Q |
194 |
tgaagaaaatcatagaaaatgtggaccaaacactagagctttcaacgaagacatgaa |
250 |
Q |
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| T |
6938893 |
tgaagaacttcatagaaggtgtggacctaacactagagcttacaatgaagacatgaa |
6938837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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