View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13545_high_6 (Length: 247)
Name: NF13545_high_6
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 1036342 - 1036145
Alignment:
| Q |
20 |
agatgtaccactatatcttagatccacatacattgttgatggtaaatcttcattcaatgcattagacataatctccatctcaattgtgctttgatatgtt |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036342 |
agatgtaccactatatcttagatccacatacattgttgatggtaaatcttcattcaatgtattagacataatctccatctcaattgtgctttgatatgtt |
1036243 |
T |
|
| Q |
120 |
ttaacatcgtttgcatcccaaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaataaaccttctttgtctttcccaaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036242 |
ttaacatcgtttgcatcccaaaaaggagagtcgtttggtaacaaccaagttgaattcaaaaatggttcacaaaataaaccttctttgtctttcccaaa |
1036145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 213
Target Start/End: Complemental strand, 1011207 - 1011102
Alignment:
| Q |
108 |
ctttgatatgttttaacatcgtttgcatcccaaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaataaaccttctttgt |
207 |
Q |
| |
|
||||||||||||| ||||| ||| ||| |||||||||||| || | ||||||||||||||||||||| ||||| || |||||||||| ||||| ||||| |
|
|
| T |
1011207 |
ctttgatatgtttcaacatgattttcattccaaaaaggagacttttctggtaacaaccaagttgaattcaaaaaaggctcacaaaatataccttgtttgt |
1011108 |
T |
|
| Q |
208 |
ctttcc |
213 |
Q |
| |
|
|||||| |
|
|
| T |
1011107 |
ctttcc |
1011102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 94 - 232
Target Start/End: Original strand, 6938559 - 6938697
Alignment:
| Q |
94 |
ccatctcaattgtgctttgatatgttttaacatcgtttgcatcccaaaaaggagagttgtttggtaacaaccaagttgaattaaaaaatggttcacaaaa |
193 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| | | ||||| |||||||||||| || | ||||||||||||||| ||||| | ||||||||| ||||| |
|
|
| T |
6938559 |
ccatcttaattgtgctttgatatgtttgaactttttctgcattccaaaaaggagatttttctggtaacaaccaagtcgaattcagaaatggttcgcaaaa |
6938658 |
T |
|
| Q |
194 |
taaaccttctttgtctttcccaaattgtacaggcataac |
232 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
6938659 |
taaaccttctttgtcttttccaaactgtacgagcataac |
6938697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University