View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13545_low_1 (Length: 627)
Name: NF13545_low_1
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 617
Target Start/End: Original strand, 27098717 - 27099316
Alignment:
| Q |
18 |
aaatgaagtaattgaaattcttcacacacactactgagtaagagaggaattagcattaccagtagaaggatcagaagaatttgagaaacaagaattctta |
117 |
Q |
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| T |
27098717 |
aaatgaagtaattgaaattcttcacacacactactgagtaagagaggaattagcattaccagtagaaggatcagaagaatttgagaaacaagaattctta |
27098816 |
T |
|
| Q |
118 |
tgattatgcatccaaaccttaaaaacttgtctactcacaccaacactttcacaaaacctttcaatctcttcatcaagttcttttctctgcaatttccatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098817 |
tgattatgcatccaaaccttaaaaacttgtctactcacaccaacactttcacaaaacctttcaatctcttcatcaagttcttttctctgcaatttccatc |
27098916 |
T |
|
| Q |
218 |
ctaacttctcagcaaatcccatcatcttctccttctgatccggcgtaaatttcgtccggtacctcttcctcctcccatcacttccactacctcctccacc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27098917 |
ctaacttctcagcaaatcccatcatcttctccttctgatccggcgtaaatttcgtccggtacctcttcctcctcccatcacttccactacctcctccacc |
27099016 |
T |
|
| Q |
318 |
ggaatattccatcatctgatccgacattgcagcagccgcggcactctcccttgtgatcgcggttattttgcggtggaagttccggtgacagccgcaggct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099017 |
ggaatattccatcatctgatccgacattgcagcagccgcggcactctcccttgtgatcgcggttattttgcggtggaagttccggtgacagccgcaggct |
27099116 |
T |
|
| Q |
418 |
gcacattggaggctgtttaccgcggatggcgatgagtcatcgatggtgaattcaccgcagccgtcggtggcgtagcttccaaggcttgctgcatggtttc |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099117 |
gcacattggaggctgtttaccgcggatggcgatgagtcgtcgatggtgaattcaccgcagccgtcggtggcgtagcttccaaggcttgctgcatggtttc |
27099216 |
T |
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| Q |
518 |
ttaaacactctctgtagatatagttttgtgaatgtgatgatgaagatgataacattcctcctccttccattgtttttatttattattttctctctctctg |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27099217 |
ttaaacactctctgtagatatagttttgtgaatgtgatgatgaagatgataacattcctcctccttccattgtttttatttattattttctctctctctg |
27099316 |
T |
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