View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13545_low_2 (Length: 583)
Name: NF13545_low_2
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 37090998 - 37091547
Alignment:
| Q |
19 |
gaggccacctgggggaggaccagaaacagtttttgccgagttactgtagtgaagtatggaggtagctgttaatatttgagaagtaaatcgtgttgaagca |
118 |
Q |
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| T |
37090998 |
gaggccacctgggggaggaccagaaacagtttttgccgagttactgtagtgaagtatggaggtagctgttaatatttgagaggtaaatcgtgttgaagca |
37091097 |
T |
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| Q |
119 |
acgatataatagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgt |
218 |
Q |
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| T |
37091098 |
acgatataatagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgt |
37091197 |
T |
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| Q |
219 |
ggattccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtatt |
318 |
Q |
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| T |
37091198 |
ggattccttccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtatt |
37091297 |
T |
|
| Q |
319 |
gcctgccaaataagcaagaaaactgtaattactattgttgagtatgactcaaattcacaaaactcctaattcatcgctggagtttttgtgtgcggttaat |
418 |
Q |
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| T |
37091298 |
gcctgccaaataagcaagaaaactgtaattactattgttgagtatgactcaaattcacaaaactcctaattcatcgctggagtttttgtgtgcggttaat |
37091397 |
T |
|
| Q |
419 |
ttatcagttttctttagaatcggatttggtgttctaacaaatatccatatcatagaatcaatctagnnnnnnntaaaatgcttgaagttgtttaaatgta |
518 |
Q |
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| T |
37091398 |
ttatcagttttctttagaatcggatttggtgttctaacaaatatccatatcatagaatcaatctagaaaaaaataaaatgcttgaagttgtttaaatgta |
37091497 |
T |
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| Q |
519 |
ccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatgat |
568 |
Q |
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| T |
37091498 |
ccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattgatgat |
37091547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 5e-45; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 128 - 324
Target Start/End: Complemental strand, 17347336 - 17347140
Alignment:
| Q |
128 |
tagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattcctt |
227 |
Q |
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| T |
17347336 |
tagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtgacttcctt |
17347237 |
T |
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| Q |
228 |
ccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgc |
324 |
Q |
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| T |
17347236 |
ccacctcaacaagctttatcttatgcccttggattctgaaattgattgatgtggtaatccccacatttgatatccggaatctgtaagtcttgcctgc |
17347140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 128 - 308
Target Start/End: Original strand, 17136480 - 17136660
Alignment:
| Q |
128 |
tagtcttgtggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattcctt |
227 |
Q |
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| T |
17136480 |
tagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcgtaaatgttttgcacagtgtgacttcctt |
17136579 |
T |
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| Q |
228 |
ccacttcaactagtttcatcttatgaccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatc |
308 |
Q |
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| T |
17136580 |
ccacctcaacaagcttcatcttatgcccttggattctgaaattgatggatgtggtaatccccacatttgatatccggaatc |
17136660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 517 - 567
Target Start/End: Original strand, 17137070 - 17137120
Alignment:
| Q |
517 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatga |
567 |
Q |
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| T |
17137070 |
taccttgatcaaccgtgaatgtgtaagcattagaaccgcgaccattgatga |
17137120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 567
Target Start/End: Complemental strand, 17346723 - 17346673
Alignment:
| Q |
517 |
taccttgatcaactgtgaatgtgtaagcattagaaccgcgaccattgatga |
567 |
Q |
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| T |
17346723 |
taccttgatcaaccgcgaatgtgtaagcattggaaccgcgaccattgatga |
17346673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 324
Target Start/End: Complemental strand, 55295970 - 55295900
Alignment:
| Q |
254 |
ccttgaattctgaaattgatggaagttgtgagtccaacatttgatatccggaatctgtatgtattgcctgc |
324 |
Q |
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| T |
55295970 |
ccttggattctgaagttgatggatgttgcgagcccaacatttgatattctgaatctatatgtcttacctgc |
55295900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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