View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13545_low_3 (Length: 568)
Name: NF13545_low_3
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 13 - 540
Target Start/End: Complemental strand, 41036792 - 41036270
Alignment:
| Q |
13 |
catcatcatcagtaccaaagtattagnnnnnnnnntattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatcta |
112 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41036792 |
catcatcatcagtaccaaagtattagaaaaaaaa-tattaaaattgacgagtgttggctctaatttcttgactgttttgctgcttagtgctctatatcta |
41036694 |
T |
|
| Q |
113 |
gtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagattgaagtgaggaaaatg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41036693 |
gtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaattccatgactagattgaagtgaggaaaatg |
41036594 |
T |
|
| Q |
213 |
tttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatctacgtaccaaagttacacttgtaatattaaaagtgtaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41036593 |
gttaatcccaatttacacacatcatcaccacttccactattttctgcattcccttttcatctac----caaagttacacttgtaatattaaaagtgtaca |
41036498 |
T |
|
| Q |
313 |
tatagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacttctacactcactattcttgcat |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
41036497 |
tatagcttgcacatataaaagccagtaattaatcaaaggagaaattgatgtatgatagcctatatgtttagtttcacatctacactcgctattcttgcat |
41036398 |
T |
|
| Q |
413 |
tcatatgccaatcgactgtgatttaacagaaactataaaatactgctttgatccttacacatattggacagtgatctgccgcaaaaagaaaccacgaaac |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
41036397 |
tcatatgccaatcgactgtgatttaacagaaactataaaatactgctttgatccttacacatattggacagtgatctaccgcaaaaagaaaccacgaaac |
41036298 |
T |
|
| Q |
513 |
aatagaaatcatgacgagccatgtggac |
540 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
41036297 |
aatagaaatcatgacgagccatgtggac |
41036270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 41046575 - 41046460
Alignment:
| Q |
97 |
tagtgctctatatctagtactcatccctatcatggaaagtactaataatcttttctttttccggagtcagttgtggtaattagaaagtccatgactagat |
196 |
Q |
| |
|
||||||||||||| | |||| |||||||||||||||||| | || | |||||||| ||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41046575 |
tagtgctctatatttggtacccatccctatcatggaaagaagtaccagtcttttctatttttggagtcagttgtggtaataagaaagtccatgactagat |
41046476 |
T |
|
| Q |
197 |
tgaagtgaggaaaatg |
212 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
41046475 |
tgaattgaagaaaatg |
41046460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 41030863 - 41030751
Alignment:
| Q |
360 |
atgtatgatagcctatatgtttagtttcact---tctacactcactattcttgcattcatatgccaatcgactgtgatttaacagaaactataaaatact |
456 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| || ||||||||||| || || |||||||||||||| || ||||||||| |||||||| ||| || |
|
|
| T |
41030863 |
atgtatgatagcctctatgtttgatttcactagttccacactcactatactcgcgttcatatgccaatcaacagtgatttaatagaaactacaaactata |
41030764 |
T |
|
| Q |
457 |
gctttgatcctta |
469 |
Q |
| |
|
||||||||||||| |
|
|
| T |
41030763 |
gctttgatcctta |
41030751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University