View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13545_low_4 (Length: 441)
Name: NF13545_low_4
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 101 - 434
Target Start/End: Complemental strand, 33594399 - 33594069
Alignment:
| Q |
101 |
acatgaggatgaagaaattaagacccatcaagtcaccagagctgtttcaaaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
200 |
Q |
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| T |
33594399 |
acatgatgatgaagaaattaagacccatcaagtcaccagagctgtttcacaatttccattaatttcatatccaatcattcacattcccatgccttaaatc |
33594300 |
T |
|
| Q |
201 |
tacaccccttctatcatcatcaatcaaataaaaatagtacatgtcttagatcatatacaaatcttaaatgaagcaaattattttcctccacatgtacata |
300 |
Q |
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| T |
33594299 |
gacacccctact---atcatcaatcaaataaaaatagtacaagtctcagatc--atacaaatcttaaatgaagcaaattattttcctccacatgtacata |
33594205 |
T |
|
| Q |
301 |
caaataagataacagtaacttgctnnnnnnntagataacagtaacaaaaa--taatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
398 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33594204 |
caaataagataacagtaacttgctaaaaaaatagataacagtaacaaaaaataaatatcatgtcatatcatatatacactataattttgtatgtggaaaa |
33594105 |
T |
|
| Q |
399 |
caccatagaaaagggataacaagtttgtcgtctctg |
434 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33594104 |
caccatagaaaagggataacaagtttgtcgtctctg |
33594069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 33596627 - 33596525
Alignment:
| Q |
1 |
tcatcactttcatccacatgtagagtaatatagcaaagattcaataatatcccacaaccgatggaattacagataaattggtgttggcataaggtagtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33596627 |
tcatcactttcatccacatgtagagtaatatagcaaaaattcaataatatcccacaaccgatggaattacagataaattggtgttggcataaggtagtcc |
33596528 |
T |
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| Q |
101 |
aca |
103 |
Q |
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||| |
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| T |
33596527 |
aca |
33596525 |
T |
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