View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13545_low_5 (Length: 427)
Name: NF13545_low_5
Description: NF13545
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13545_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 147 - 417
Target Start/End: Original strand, 42825204 - 42825474
Alignment:
| Q |
147 |
gaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtacctaggtttcttacctttcccaaccttagcaacaagtt |
246 |
Q |
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| T |
42825204 |
gaattactactatctttgatatctctgttaggtcctctattgtctttagacctcgtggagtacctaggtttcttacctttcccaaccttagcaacaagtt |
42825303 |
T |
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| Q |
247 |
ccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctc |
346 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42825304 |
ccttatcatcttcactatcaccattccacacgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctc |
42825403 |
T |
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| Q |
347 |
atcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgccctttg |
417 |
Q |
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| T |
42825404 |
atcctcactttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgccctttg |
42825474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 277 - 392
Target Start/End: Original strand, 42846088 - 42846203
Alignment:
| Q |
277 |
cgtcatcctcgttgtctctaaatactttccgctttccctttattttccttttctcctcaaaatcatcctcatcctcactttctttgctaggctcctcgag |
376 |
Q |
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| T |
42846088 |
cgtcatcctcgttgtctctaaatacttttcactttcccttcattttcatcatctccttaaaatcatctgcatccatgttttctttgctaggctctgcgag |
42846187 |
T |
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| Q |
377 |
gaaccactcccaattc |
392 |
Q |
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| T |
42846188 |
ggaccactcccaattc |
42846203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 416
Target Start/End: Original strand, 42835460 - 42835555
Alignment:
| Q |
325 |
ttttctcctcaaaatcatcctcatcctcac----tttctttgctaggctcctcgaggaaccactcccaattctccacattccggatcatgcccttt |
416 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| |
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| T |
42835460 |
ttttctcctcaaaatcatcctcatcattccctgctttctttgctaggctcctcgaggaaccactcttaattctccacattcccgattatgtccttt |
42835555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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