View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13546_low_2 (Length: 320)
Name: NF13546_low_2
Description: NF13546
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13546_low_2 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 23 - 320
Target Start/End: Complemental strand, 36069119 - 36068822
Alignment:
| Q |
23 |
aacatgaatggccagtggtaacacattagcagaaaatatttaacagtaagaataaactggccattagtgaaaccaaatggctaatataactttgcttaat |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36069119 |
aacatgaatggccagtggtaacacattagcagaaaatatttaaaagtaagaataaactggccattagtgacaccaaatggctaatataactttgcttaat |
36069020 |
T |
|
| Q |
123 |
ttcaagagttaatcaaaagctctaatattaaccttctaattaccaagacaannnnnnnnnnnnaatctaatcatggcttacaatcttttctgaagcatga |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36069019 |
ttcaagagttaatcaaaagctctaatattaaccttctaattaccaagacaattttttttttttaatctaatcatggcttacaatcttttctgaagcatga |
36068920 |
T |
|
| Q |
223 |
tggcttacaatctgaaacaaaaactgttctcaattactcttctgttctgcataattttttcaccaactgaaacagcatcaacattcagccattacaat |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36068919 |
tggcttacaatctgaaacaaaaactgttctcaattactcttctgttctgcataattttttcaccaactgaaacagcatcaacattcagccattacaat |
36068822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 36082998 - 36082939
Alignment:
| Q |
104 |
taatataactttgcttaatttcaagagttaatcaaaagctctaatattaaccttctaatta |
164 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||||| ||||||||| ||||||||| |
|
|
| T |
36082998 |
taatataactttgcttagtttcaagatttaatcaagagctc-aatattaacgttctaatta |
36082939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University