View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_high_1 (Length: 866)
Name: NF13547_high_1
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_1 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 604; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 12 - 866
Target Start/End: Original strand, 2044491 - 2045324
Alignment:
| Q |
12 |
cagctcatagtattccccctcatcgcggggattccaatgatagaaacggtgctccccctccagctcctcctcagaattccaacggtggaacnnnnnnngg |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2044491 |
cagctcatagtattccccctcatcgcggggattccaatgatagaaacggtgctccccctccagctcctcctcagaattccaacggtggaactttttttgg |
2044590 |
T |
|
| Q |
112 |
aacaatggctgaaggtatgagcgtgtcacggtagtaggaaactcgaatccgagaggattcatatttcataagagaaagttagggaaagtaatattctttc |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2044591 |
aacaatggctgaaggtatgcgcgtgtcacggtagtaggaaactcgaatccgagaggattcatatttcataagagaaagttagggaaagtaatattctttc |
2044690 |
T |
|
| Q |
212 |
aattaggacttgtttcggctagtactctattacaaaggacatggcatggcaataccatttccaatatacttgtgattttgtaccgaattgagtatgtttt |
311 |
Q |
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| T |
2044691 |
aattagg---------------tactctattacaaaggacatggcatgacaataccatttccaatatacttgtgattttgtaccgaattgagtatgtttt |
2044775 |
T |
|
| Q |
312 |
ctttcaatttgtaggagtggcttttggggctggagcttctatggtagacggggctgtggatgctgtgtttggtcctcgaactattcgaaatgaaaaagtt |
411 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2044776 |
ctttcaatttgtaggagtggcttttggggctgga-cttctatggtagacagggctgtggatgctgtgttttgtcctcgaactattcgaaatgaaaaagtt |
2044874 |
T |
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| Q |
412 |
gttactggatctcctgcacc------cgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtat |
505 |
Q |
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| T |
2044875 |
gttactggatctcctgcacctgcacccgcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtat |
2044974 |
T |
|
| Q |
506 |
gttgtttannnnnnncatatgattttactctcttacgttgtatgttgttgaaaataatatagtttgttcaaatttgactacgcaatagtattttagagcc |
605 |
Q |
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| T |
2044975 |
gtttttt-ttttattcatatgattttactctctta-------tgttgttgaaaataata--gtttgttcaaatttgactacgcaatagtattttagagcc |
2045064 |
T |
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| Q |
606 |
actatagctgctatttgacaatattttactaaatagtgtataacnnnnnnntaaagatgtgttcaaattctacaaaattgcgtttgtacttgcgttctat |
705 |
Q |
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| T |
2045065 |
actatagctgctatttgataatattttactaaatagtgtataacaaaacaataacgatgtgttcaaattctacaaaattgcttttgtacttgcattctat |
2045164 |
T |
|
| Q |
706 |
ttaagaagtatttcttatagtgatcctgttcctttggtagcagtgcattaatagcaatgaaaatgagattagcaagtaccagttttacaaggacatgctc |
805 |
Q |
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||||||| ||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2045165 |
ttaagaa-tatttcttatagtgaatctgttcttttggttgcagtgcattaatagcaatgaaaatgagattagcaagtgccagttttacaaggacatgctc |
2045263 |
T |
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| Q |
806 |
gtagagtgcagaaggaaattgagtgcatgacacgtgtttcatttcctttgccatccaatgc |
866 |
Q |
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| T |
2045264 |
gtagagtgcagaaggaaattgagtgcatgaaacgtgtttcatttcctttgccatccaatgc |
2045324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 279 - 406
Target Start/End: Original strand, 2041473 - 2041600
Alignment:
| Q |
279 |
acttgtgattttgtaccgaattgagtatgttttctttcaatttgtaggagtggcttttggggctggagcttctatggtagacggggctgtggatgctgtg |
378 |
Q |
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|||| |||||||||| ||||||||| ||||| ||||||||||||||||||||||||| || ||| || |||| | | | | |||||||||||||||| |
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| T |
2041473 |
acttatgattttgtaatgaattgagtttgtttactttcaatttgtaggagtggctttttggactgaagtttctgttgcacgcagggctgtggatgctgta |
2041572 |
T |
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| Q |
379 |
tttggtcctcgaactattcgaaatgaaa |
406 |
Q |
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| T |
2041573 |
tttggccctccaactattcgaagtgaaa |
2041600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 433 - 512
Target Start/End: Original strand, 2041651 - 2041730
Alignment:
| Q |
433 |
gcacccgcacccaatgctaaaagtcttagtagcgatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
512 |
Q |
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||||| ||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||| |||||| ||||||| |
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| T |
2041651 |
gcacctgcacccaatactcaaagtcttggtagcgatgcatgcaatattcactcaaaggctttccttgatgtaagttgttt |
2041730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 705 - 782
Target Start/End: Original strand, 2042059 - 2042136
Alignment:
| Q |
705 |
tttaagaagtatttcttatagtgatcctgttcctttggtagcagtgcattaatagcaatgaaaatgagattagcaagt |
782 |
Q |
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|||||||| ||||||| | |||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||||| |
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| T |
2042059 |
tttaagaaatatttctcaaggtgatcctgttcatttggtttcagtgcattaacagcaatgaaaatgagatcagcaagt |
2042136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 466 - 512
Target Start/End: Complemental strand, 37032748 - 37032702
Alignment:
| Q |
466 |
gatgcatgcgatattcactcaaaggctttcctagatgtatgttgttt |
512 |
Q |
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||||||||| ||||||| |||||||| |||| ||||||||||||||| |
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| T |
37032748 |
gatgcatgcaatattcattcaaaggcattccaagatgtatgttgttt |
37032702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 567 - 646
Target Start/End: Complemental strand, 7347802 - 7347721
Alignment:
| Q |
567 |
gtttgttcaaatttgactacgcaatagtattttagagccactatagctgctatttgacaatattt--tactaaatagtgtat |
646 |
Q |
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| T |
7347802 |
gtttgttcaaattacattacgcaacagtactatagcgcctctatagccgctatttcacaatattttgtactaaatagtgtat |
7347721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 603 - 632
Target Start/End: Complemental strand, 739745 - 739716
Alignment:
| Q |
603 |
gccactatagctgctatttgacaatatttt |
632 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
739745 |
gccactatagctgctatttgacaatatttt |
739716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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