View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_high_14 (Length: 336)
Name: NF13547_high_14
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 4 - 322
Target Start/End: Original strand, 40556294 - 40556612
Alignment:
| Q |
4 |
acaaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttgtttctagaatattgaatg |
103 |
Q |
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| T |
40556294 |
acaaaatacaaaactgatcgaggagaataaggaagaaaagtcactggagcttcaacatcgaaaatggaggaaagtgtttttgtttctagaatattgaatg |
40556393 |
T |
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| Q |
104 |
aatatggtggtgatgattatcggatgatggaaaatttattatgtttgcgatctaagttcttagctaatcaattcaaagatgatgtttctcatattcttcg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
40556394 |
aatatggtggtgatgattatcggatgatggaaaatttactaagtttgcgatctaagttcttagctaatcaattcaaaaatgatgtttcttatattcttcg |
40556493 |
T |
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| Q |
204 |
gtcaaataaccaggagtactatgctgctgattcggaatgcaacgatgattttaagaaagttacagtgaaggaaaaaagaagtaagcgatcaaagaagaat |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40556494 |
gtcaaataaccgggagtactatgctgctgattcggaatgcaacgatgattttaagaaagttacagtgaaggaaaaaagaagtaaccgatcaaagaagaat |
40556593 |
T |
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| Q |
304 |
catgaggacgttgtttgtg |
322 |
Q |
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|||||||| |||||||||| |
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| T |
40556594 |
catgaggatgttgtttgtg |
40556612 |
T |
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