View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_high_17 (Length: 278)
Name: NF13547_high_17
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 7305859 - 7305966
Alignment:
| Q |
14 |
atatgagttgttttagaaaaatcaatggnnnnnnncttgggtttttaggtggaaagcgaaaatgagatgatgtagtgaataaattagtgttggtgaagat |
113 |
Q |
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| T |
7305859 |
atatgagttgttgtagaaaaatcaatggtttttttcttgggtttttaggtggaaagcgaaaatgagatgatggagtgaataaattagtgttggtgaagat |
7305958 |
T |
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| Q |
114 |
gagcagat |
121 |
Q |
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|||||||| |
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| T |
7305959 |
gagcagat |
7305966 |
T |
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Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 1309733 - 1309623
Alignment:
| Q |
14 |
atatgagttgttttagaaaaatcaatggnnnnnnncttgggtttttaggtggaaagcgaaaatgagatgatgtagtgaataaattagtgttggtgaagat |
113 |
Q |
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| T |
1309733 |
atatgagttgttgtagaaaaatcaatggtttttttcttggatttttaggtggaaagtgaaaatgagatgatggagtgaataaattagtgttggtgaagat |
1309634 |
T |
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| Q |
114 |
gagcagataga |
124 |
Q |
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| T |
1309633 |
gagcagataga |
1309623 |
T |
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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 121
Target Start/End: Original strand, 11797174 - 11797244
Alignment:
| Q |
51 |
tgggtttttaggtggaaagcgaaaatgagatgatgtagtgaataaattagtgttggtgaagatgagcagat |
121 |
Q |
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| T |
11797174 |
tgggtttttaggtggaaatcgaaaatgagaagatggagtgaataaattagtgttggtgaagatgagaagat |
11797244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 37415507 - 37415410
Alignment:
| Q |
14 |
atatgagttgttttag--aaaaatcaatggnnnnnnncttgggtttttaggtggaaagcgaaaatgagatgatgtagtgaataaattagtgttggtga |
109 |
Q |
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|||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
37415507 |
atatgagttgttgtagtgaaaaatcaatggtttttttcttgggtttttaggtggaaagcgaaaatgagaagatggagtgaataaattagtgttggtga |
37415410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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