View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_high_19 (Length: 256)
Name: NF13547_high_19
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 18587334 - 18587556
Alignment:
| Q |
17 |
caaagggaatcagccgtcaagactagaataaggaccctcacaagagaatgatgcaatgcaaaagttgttttcaaactgatagaagaaggtaaattcgagc |
116 |
Q |
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| T |
18587334 |
caaagggaatcaaccgtcaagactagaataaggactcttacaagagaatgatgcaatgcaaaagttgttttcaaactgatagaagaaggtaaattcgagc |
18587433 |
T |
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| Q |
117 |
ttattctattacatgaaatacatacacgtccacttgcttggcctatgaagaaacaatttcgaagatcatatagaaaagtttcaaggcaaagttagactag |
216 |
Q |
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| T |
18587434 |
ttattcgattacatgaaaaacatacacatccacttgcttggcctatgaagaaacaatttcgaagatcatatagaaaagtttcaaggcaaaattagactag |
18587533 |
T |
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| Q |
217 |
atgcctaacaaaatacttaaaat |
239 |
Q |
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| T |
18587534 |
atgcctaacaaaatatttaaaat |
18587556 |
T |
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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 195
Target Start/End: Complemental strand, 23471271 - 23471093
Alignment:
| Q |
15 |
agcaaagggaatcagccgtcaagactagaataaggaccctcacaagagaatgatgcaatgcaaaagttgttttcaaactgatagaagaaggtaaattcga |
114 |
Q |
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||||||| |||||| | ||||||||||||| || || || ||| |||| |||| |||||||||||||||||||||||||| ||||||||||||||| | |
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| T |
23471271 |
agcaaagtgaatcatcagtcaagactagaagaaagagtcttacatgagattgatacaatgcaaaagttgttttcaaactgacagaagaaggtaaatttta |
23471172 |
T |
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| Q |
115 |
gcttattctattacatgaaatacatacacgtccacttgcttggcctatgaagaaacaatttcgaagatcatatagaaaagt |
195 |
Q |
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| T |
23471171 |
gcttattcgatttcatgaa--tcatacacattcacttgcttcgcctgataagaaacaatttctaagatcatttagaaaagt |
23471093 |
T |
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