View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_high_4 (Length: 626)
Name: NF13547_high_4
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 22 - 616
Target Start/End: Complemental strand, 12945590 - 12944996
Alignment:
| Q |
22 |
ccctgctctacattagctgctcaaattcctgccattgttgcctcggttgattatcgtctctcgcctgagcatcgcctcccagcagcctacgatgatgcag |
121 |
Q |
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| T |
12945590 |
ccctgctctacattagctgctcaaattcctgccattgttgcctccgttgattatcgtctctcgcctgagcatcgcctcccagcagcctacgatgatgcag |
12945491 |
T |
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| Q |
122 |
ttgattctcttctctggctcaaatcccaagctcaaaatccaacggaatctgatccatggatcagagaccatgtggactttgataaatgtttcttgatggg |
221 |
Q |
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| T |
12945490 |
ttgattctcttctctggctcaaatcccaagctcaaaatccaacagaatctgatccatggatcagagaccacgtggactttgataaatgcttcttgatggg |
12945391 |
T |
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| Q |
222 |
agacagtgccggaggtaacatagcctatttcgcaggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatcca |
321 |
Q |
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| T |
12945390 |
agacagtgccggaggtaacatagcctatttcgcaggtctacgtgctctcgaccttgatctctctcacattaaaatccgagggatcataatgaaatatcca |
12945291 |
T |
|
| Q |
322 |
ttttttagtggggtccaaagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgc |
421 |
Q |
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| T |
12945290 |
ttttttagtggggtccagagaacggaatctgagcttcgtttggtcaacgatcgtatattaccattaccagcaggtgacctcatgtggttcctatgtttgc |
12945191 |
T |
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| Q |
422 |
ctgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatgg |
521 |
Q |
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| T |
12945190 |
ccgagggcaaagacagggaccacgagtattgcaatccaacaactttggatcacgtatacggtgaaaagattggacggttgccaaggtgctttgttaatgg |
12945091 |
T |
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| Q |
522 |
ctacggtggtgatccattggtggataagcaaaaggagctggcgaagatttttgcagcacgcggggtgcacgtggagtcctgttttgatgatgatg |
616 |
Q |
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| T |
12945090 |
ctacggtggagatccattggtggataagcagaaggagctggcgaagattttggcggcacgtggggtgcacgtggagtcctgttttgatgaggatg |
12944996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 56 - 599
Target Start/End: Complemental strand, 12937884 - 12937341
Alignment:
| Q |
56 |
ttgttgcctcggttgattatcgtctctcgcctgagcatcgcctcccagcagcctacgatgatgcagttgattctcttctctggctcaaatcccaagctca |
155 |
Q |
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| T |
12937884 |
ttgtagcctcagttgctcatcgtctcactccagagcaccgtctccctgctgcctatgatgacgctattgattcattgttctggctcagagcccaagcaca |
12937785 |
T |
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| Q |
156 |
aaatccaacggaatctgatccatggatcagagaccatgtggactttgataaatgtttcttgatgggagacagtgccggaggtaacatagcctatttcgca |
255 |
Q |
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| T |
12937784 |
aaatccaagtgtctctgatccatggatcagagacaacgtggactttgataactgcttcttgatgggaagtagtgcaggaggtaacatagcgtacttcgca |
12937685 |
T |
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| Q |
256 |
ggtctacgtgctcttgacgttgatctctctcccattaaaatccgagggatcataatgaaatatccattttttagtggggtccaaagaacggaatctgagc |
355 |
Q |
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| T |
12937684 |
ggtctacgtgctcttgacctcgatctctctcctcttaagatccaagggcttataatgaatgctccgttttttggtggggttcagagaacaaaatctgagc |
12937585 |
T |
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| Q |
356 |
ttcgtttggtcaacgatcgtatattaccattaccagcaggtgatctcatgtggtccctgtgtttgcctgagggcaaagacagggaccacgagtattgcaa |
455 |
Q |
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| T |
12937584 |
ttcgtttcattaacgataatatactacccttatcagcaagtgatctcatgtgggccctatctttgcctgagggtacagatcgggatcacgtgtattgtaa |
12937485 |
T |
|
| Q |
456 |
tccaacaactttggatcacgtatacggtgaaaagataggacggttgccaaggtgttttgtaaatggctacggtggtgatccattggtggataagcaaaag |
555 |
Q |
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| T |
12937484 |
tccaaaagtttcggatgtgatacatggtgagaagatcggacggctgccgaggtgctttgttaacggctacggtggggatcccttggtggataggcaaaag |
12937385 |
T |
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| Q |
556 |
gagctggcgaagatttttgcagcacgcggggtgcacgtggagtc |
599 |
Q |
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| T |
12937384 |
gagctagtgaagattttggaggcacgtggggtgcacgtggagtc |
12937341 |
T |
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