View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13547_high_6 (Length: 563)
Name: NF13547_high_6
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Original strand, 46913384 - 46913929
Alignment:
| Q |
1 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913384 |
ctatttctacgacaccacggagcttccaccacctgacttttcttccgtcttcgcctcccaacggttcttcttctcctccccaggcagctccaattccatc |
46913483 |
T |
|
| Q |
101 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913484 |
acagagtctccctccaacgacactctaccctgtaataactcgttgataccaagaggaggtagtgtgaagagggtgccaaaatattctgtaaacccttacg |
46913583 |
T |
|
| Q |
201 |
ttgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggttgatgttactaatgattgggattatcttcatgaacttctcatatgcta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
46913584 |
ttgatttcctccgttctatgcaggaaatgattcaatctcaacaacaagtggtggatgttactaacgattgggattatcttcatgaacttctcttatgcta |
46913683 |
T |
|
| Q |
301 |
tcttgctcttaatcctacacatactcacaagtatattgttcaagctttcactcaccttcttgttgatattttatcttcctcctcctctttatcattctcc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913684 |
tcttgctcttaatcctacacatactcacaagtatattgttcaagctttcactcaccttcttgttgatattttatcttcctcctcctctttatcattctcc |
46913783 |
T |
|
| Q |
401 |
tcctcttcatctccgccatcgcctcccaagctcaataaccaacgccacatcgccacagtggtttctccaggaggttggtgtaaaaatattaaatgccaag |
500 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46913784 |
tcctcttcatctccgccatcacctccgaagctcaataaccaacgccacatcgccacagtagtttctccaggaggttggtgtaaaaatattaaatgccaag |
46913883 |
T |
|
| Q |
501 |
gttttaaataatgatcgcggttgtacgtaatagttattgtagcatc |
546 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||| ||||| |
|
|
| T |
46913884 |
gttttaaataatgatcgcgattgtaagtaatagttattgtggcatc |
46913929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University