View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_11 (Length: 469)
Name: NF13547_low_11
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 37071581 - 37071970
Alignment:
| Q |
1 |
tgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071581 |
tgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcata |
37071680 |
T |
|
| Q |
101 |
atcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071681 |
atcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaa |
37071780 |
T |
|
| Q |
201 |
ttgttagtgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071781 |
ttgttagtgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttg |
37071880 |
T |
|
| Q |
301 |
cagcaatatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaatcttatcat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37071881 |
cagcaatatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaatcttatcat |
37071970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 204 - 390
Target Start/End: Original strand, 37081535 - 37081721
Alignment:
| Q |
204 |
ttagtgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttgcag |
303 |
Q |
| |
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|||||||| ||||||||||| ||| |||||||| ||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
37081535 |
ttagtgtactctaaccatgccgtttttatatcatgccgttcaaaattagcataagctgccaatagcttttcaacgattgagatgtgtccacctcttgcag |
37081634 |
T |
|
| Q |
304 |
caatatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaatcttatcat |
390 |
Q |
| |
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||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
37081635 |
caatatgtaacgcactctcgttgttttcattaacctcgaacaaaagttttggagcatgttcaattacaagactcacaatcttatcat |
37081721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 36952499 - 36952263
Alignment:
| Q |
146 |
ttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttcttatatcacgccgttca |
245 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||| |
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| T |
36952499 |
ttctaacaagtcctccatatttgacttttcatcatactcttttgggtcatccaaattgttagtgtattctaaccatgccatttttatatcatgccgttca |
36952400 |
T |
|
| Q |
246 |
atattagcatatgctttc-aatagcttttcaacgattgagatgtgtccacatcttgcagcaatatgtaacgcactctcattgttttcattaaactcgaac |
344 |
Q |
| |
|
||||||||||| ||| | |||||||||| |||| || ||||||||||| ||||||||||| |||||| ||||| |||||||||| ||||| |||| |
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|
| T |
36952399 |
atattagcata-acttgctaatagctttttaacggtttggatgtgtccacctcttgcagcaacatgtaaggcactatcattgtttttgttaaatgtgaac |
36952301 |
T |
|
| Q |
345 |
aaaagtgttggagcatgttcaactacaagactcacaat |
382 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||| |
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|
| T |
36952300 |
aaaagttttggagcatgttcaactacaagattcacaat |
36952263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 208 - 382
Target Start/End: Complemental strand, 36934971 - 36934797
Alignment:
| Q |
208 |
tgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttc-aatagcttttcaacgattgagatgtgtccacatcttgcagcaa |
306 |
Q |
| |
|
|||| ||||||||||| || |||| |||| |||||||||||||||||| ||| | ||||||||||||||| |||||||||||||| |||| ||||||| |
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|
| T |
36934971 |
tgtactctaaccatgccatttttatctcactccgttcaatattagcataa-cttgctaatagcttttcaacggttgagatgtgtccatatctagcagcaa |
36934873 |
T |
|
| Q |
307 |
tatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaat |
382 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| |||||||||| ||||||||||||||| ||||||| ||||||| |
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|
| T |
36934872 |
catgtaaggcactatcattgttttcgttaaacttgaacaaaagttttggagcatgttcaattacaagattcacaat |
36934797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 36952556 - 36952459
Alignment:
| Q |
8 |
acataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatctt |
105 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||| ||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
36952556 |
acataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactctt |
36952459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 208 - 382
Target Start/End: Complemental strand, 36963855 - 36963681
Alignment:
| Q |
208 |
tgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttc-aatagcttttcaacgattgagatgtgtccacatcttgcagcaa |
306 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| ||| ||| | ||||| ||| |||| ||||||||||||||| ||||||||||| |
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|
| T |
36963855 |
tgtattctaaccatgccatttttatatcacgccgttcaatattagtataa-cttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaa |
36963757 |
T |
|
| Q |
307 |
tatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaat |
382 |
Q |
| |
|
|||||| | || |||||||||| || || |||||||||| ||||||||||||||| ||||||| ||||||| |
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|
| T |
36963756 |
catgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagcatgttcaattacaagattcacaat |
36963681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 208 - 382
Target Start/End: Complemental strand, 36946532 - 36946358
Alignment:
| Q |
208 |
tgtattctaaccatgctgttcttatatcacgccgttcaatattagcatatgctttc-aatagcttttcaacgattgagatgtgtccacatcttgcagcaa |
306 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| ||| ||| | ||||| ||| |||| ||||||||||||||| ||||||||||| |
|
|
| T |
36946532 |
tgtattctaaccatgccatttttatatcacgccgttcaatattagtataa-cttgctaatagtgttttaacggttgagatgtgtccacctcttgcagcaa |
36946434 |
T |
|
| Q |
307 |
tatgtaacgcactctcattgttttcattaaactcgaacaaaagtgttggagcatgttcaactacaagactcacaat |
382 |
Q |
| |
|
|||||| | || |||||||||| || || |||||||||| |||||| |||||||| ||||||| ||||||| |
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|
| T |
36946433 |
catgtaaggggctatcattgtttttgttgaatgtgaacaaaagttttggagaatgttcaattacaagattcacaat |
36946358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 37081422 - 37081470
Alignment:
| Q |
1 |
tgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
49 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37081422 |
tgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
37081470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 36946651 - 36946555
Alignment:
| Q |
11 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttct |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | ||||||| | |||||||| ||| | ||||||||||||| || |||||||| |||||| |
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|
| T |
36946651 |
taacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctcatcatagtcttct |
36946555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 107
Target Start/End: Complemental strand, 36963982 - 36963878
Alignment:
| Q |
3 |
tcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataat |
102 |
Q |
| |
|
|||| ||| |||||||||||||| |||||||||||||||| | ||||||| | |||||||| ||| | ||||||||||||| || |||||||| | |
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|
| T |
36963982 |
tcaccacaaaacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctcatcatagt |
36963883 |
T |
|
| Q |
103 |
cttct |
107 |
Q |
| |
|
||||| |
|
|
| T |
36963882 |
cttct |
36963878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 149 - 382
Target Start/End: Original strand, 12495536 - 12495772
Alignment:
| Q |
149 |
taacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgtt---agtgtattctaaccatgctgttcttatatcacgccgttca |
245 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| | || |||| ||| || |||||||||||||||||| || |||||||| |||||||| |
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|
| T |
12495536 |
taacaagtcctccatatttgacttttcatcatagtcttcttggtcatccttattttttttagtgtattctaaccatgccatttttatatcatgccgttca |
12495635 |
T |
|
| Q |
246 |
atattagcatatgctttcaatagcttttcaacgattgagatgtgtccacatcttgcagcaatatgtaacgcactctcattgttttcattaaactcgaaca |
345 |
Q |
| |
|
||||| |||| | | ||||||||||||| |||| |||||||||| ||||||||| ||| || ||||| |||||||||| ||||| | |||| |
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|
| T |
12495636 |
atattcacataatttgctagtagcttttcaacggttgaaatgtgtccaccatttgcagcaacatgaaatgcactatcattgtttttgttaaatttaaaca |
12495735 |
T |
|
| Q |
346 |
aaagtgttggagcatgttcaactacaagactcacaat |
382 |
Q |
| |
|
||||| ||||| || |||||| ||||||| ||||||| |
|
|
| T |
12495736 |
aaagttttggaacacgttcaattacaagattcacaat |
12495772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 12495479 - 12495576
Alignment:
| Q |
11 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttctt |
108 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
12495479 |
taacattgcctcatgtaacatagtgttgcctcgaacattcttctcctttacaaaatttaacaagtcctccatatttgacttttcatcatagtcttctt |
12495576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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