View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_12 (Length: 431)
Name: NF13547_low_12
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 39 - 428
Target Start/End: Original strand, 33886848 - 33887249
Alignment:
| Q |
39 |
ctccccttgagcacactccataactctctct------gacactaaaactaaaaacgcacgcactctaannnnnnnccactactctctctttctctcattc |
132 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||| |
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| T |
33886848 |
ctccccttgagcacactccataactctctctctctctgacactaaaactaaaaatgcacgcactctaatttttttccactactctctctatctctcattc |
33886947 |
T |
|
| Q |
133 |
aagacattcaatgcaaacgaacccactcataacgaccctccaacggcatgtctctaacaatatcaaagttgtacctacaaacaacgcagcaaagttgtta |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33886948 |
aagacattcaatgcaaacgaacccactcataacgaccctccaacggcatgtctctaacaatatcaaagttgtacctacaaacaacgcagtaaagttgttg |
33887047 |
T |
|
| Q |
233 |
gttagttagggtttgattctgccactgc------acagggacagggaatagatcactgctcacattccgtatcttgtgtcactcatttcaaaataaaggt |
326 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |
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| T |
33887048 |
gttagttagggtttgattctgccactgcacagggacagggacagggaatagatcactgctcacattccttatcttgtgtcactcatttcaaaataaaagt |
33887147 |
T |
|
| Q |
327 |
taaaataatttatagcaggtggtagttttattatattcttacttctcagcaaatctcttccgctcttccctctcaaaatttgcaaagaattcatcaatct |
426 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33887148 |
taaaataatttatagcaggtggtagttttattatatacttacttctcagcaaatctcttccgctcttccctctcaaaatttgcaaagaattcatcaatct |
33887247 |
T |
|
| Q |
427 |
cc |
428 |
Q |
| |
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|| |
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| T |
33887248 |
cc |
33887249 |
T |
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