View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13547_low_2 (Length: 791)

Name: NF13547_low_2
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13547_low_2
NF13547_low_2
[»] chr4 (16 HSPs)
chr4 (73-776)||(11863148-11863850)
chr4 (673-776)||(47416465-47416568)
chr4 (676-776)||(12585554-12585654)
chr4 (676-755)||(23935042-23935121)
chr4 (681-776)||(49039440-49039535)
chr4 (727-760)||(33708800-33708833)
chr4 (682-754)||(42432014-42432086)
chr4 (681-776)||(20610744-20610839)
chr4 (681-776)||(33359822-33359917)
chr4 (681-776)||(41492494-41492588)
chr4 (686-760)||(52031216-52031291)
chr4 (683-776)||(6202610-6202703)
chr4 (687-776)||(6481579-6481668)
chr4 (681-762)||(29785155-29785236)
chr4 (679-776)||(39449403-39449499)
chr4 (686-746)||(52757275-52757335)
[»] chr3 (22 HSPs)
chr3 (73-178)||(30059966-30060071)
chr3 (687-776)||(4045629-4045718)
chr3 (689-776)||(23025910-23025997)
chr3 (681-776)||(23237367-23237462)
chr3 (685-756)||(34407105-34407176)
chr3 (681-771)||(31108760-31108850)
chr3 (686-776)||(36277167-36277256)
chr3 (681-760)||(42823996-42824076)
chr3 (681-776)||(24160523-24160618)
chr3 (711-774)||(26365485-26365547)
chr3 (679-760)||(28226198-28226280)
chr3 (681-774)||(16999933-17000026)
chr3 (679-776)||(32080058-32080155)
chr3 (681-776)||(19137624-19137719)
chr3 (681-776)||(28951871-28951966)
chr3 (681-776)||(33533208-33533303)
chr3 (681-735)||(3461760-3461814)
chr3 (679-756)||(13616089-13616166)
chr3 (679-776)||(16985023-16985120)
chr3 (708-757)||(43897634-43897683)
chr3 (683-760)||(49146091-49146168)
chr3 (687-776)||(49299235-49299323)
[»] chr7 (21 HSPs)
chr7 (676-776)||(35498398-35498497)
chr7 (679-776)||(16814700-16814797)
chr7 (73-173)||(9257363-9257463)
chr7 (73-173)||(9312790-9312890)
chr7 (676-776)||(24579281-24579381)
chr7 (114-176)||(11231009-11231071)
chr7 (81-171)||(20465526-20465616)
chr7 (681-776)||(44409206-44409300)
chr7 (681-762)||(1513492-1513573)
chr7 (681-776)||(3246484-3246576)
chr7 (80-136)||(16202957-16203013)
chr7 (682-776)||(25711127-25711220)
chr7 (681-760)||(41417286-41417366)
chr7 (708-751)||(32250361-32250404)
chr7 (681-755)||(924308-924382)
chr7 (682-776)||(23799306-23799400)
chr7 (710-760)||(33236278-33236328)
chr7 (679-760)||(41507730-41507812)
chr7 (708-757)||(15716671-15716720)
chr7 (681-762)||(37917397-37917478)
chr7 (679-716)||(43209404-43209441)
[»] chr2 (20 HSPs)
chr2 (681-776)||(39334876-39334971)
chr2 (80-178)||(9961156-9961254)
chr2 (681-776)||(34107279-34107374)
chr2 (681-776)||(22355088-22355183)
chr2 (710-760)||(36190088-36190138)
chr2 (681-757)||(3179329-3179405)
chr2 (708-776)||(22014647-22014715)
chr2 (700-776)||(37123210-37123286)
chr2 (681-757)||(10262744-10262820)
chr2 (688-776)||(20942104-20942192)
chr2 (686-762)||(32288386-32288462)
chr2 (730-774)||(32677383-32677427)
chr2 (681-760)||(15392222-15392301)
chr2 (678-757)||(18386826-18386905)
chr2 (700-774)||(4529760-4529834)
chr2 (686-776)||(14307689-14307779)
chr2 (682-760)||(16028119-16028197)
chr2 (686-776)||(25071220-25071310)
chr2 (687-776)||(1244580-1244669)
chr2 (676-760)||(32527088-32527173)
[»] chr1 (26 HSPs)
chr1 (681-776)||(9769575-9769670)
chr1 (686-776)||(195054-195144)
chr1 (681-776)||(9768804-9768899)
chr1 (686-774)||(50575911-50575999)
chr1 (681-776)||(3341731-3341826)
chr1 (681-751)||(1580834-1580904)
chr1 (686-776)||(41677070-41677160)
chr1 (675-760)||(5684121-5684205)
chr1 (687-776)||(13941330-13941419)
chr1 (679-776)||(19866478-19866575)
chr1 (708-761)||(50327957-50328010)
chr1 (681-757)||(12073091-12073167)
chr1 (681-757)||(15774326-15774402)
chr1 (681-757)||(49251409-49251485)
chr1 (681-736)||(7182929-7182984)
chr1 (719-774)||(9410325-9410380)
chr1 (681-776)||(9931092-9931187)
chr1 (686-776)||(12553203-12553294)
chr1 (687-757)||(3569055-3569125)
chr1 (681-774)||(7015683-7015777)
chr1 (681-735)||(11802056-11802110)
chr1 (681-735)||(23758289-23758343)
chr1 (676-734)||(28354144-28354202)
chr1 (725-774)||(24889189-24889238)
chr1 (679-776)||(48565142-48565239)
chr1 (683-776)||(50199471-50199564)
[»] chr8 (15 HSPs)
chr8 (681-762)||(39432337-39432418)
chr8 (686-776)||(11900576-11900665)
chr8 (681-776)||(7345433-7345528)
chr8 (681-756)||(8740671-8740746)
chr8 (681-776)||(25470841-25470936)
chr8 (681-757)||(43874991-43875067)
chr8 (686-760)||(35301174-35301249)
chr8 (679-776)||(43554452-43554550)
chr8 (676-756)||(36633635-36633716)
chr8 (681-760)||(10292356-10292436)
chr8 (681-760)||(22426405-22426485)
chr8 (681-760)||(40329615-40329695)
chr8 (687-730)||(16611596-16611639)
chr8 (689-776)||(22847257-22847344)
chr8 (686-757)||(24074516-24074587)
[»] scaffold0119 (1 HSPs)
scaffold0119 (681-776)||(1044-1139)
[»] chr6 (12 HSPs)
chr6 (681-776)||(26669654-26669749)
chr6 (687-776)||(6455464-6455553)
chr6 (681-776)||(9422838-9422934)
chr6 (682-776)||(4844149-4844243)
chr6 (676-734)||(30905483-30905541)
chr6 (679-756)||(9031769-9031846)
chr6 (681-734)||(31411098-31411151)
chr6 (677-776)||(31595172-31595271)
chr6 (681-774)||(14949016-14949110)
chr6 (703-756)||(15288970-15289023)
chr6 (681-734)||(20858420-20858473)
chr6 (687-776)||(30833028-30833117)
[»] chr5 (13 HSPs)
chr5 (82-178)||(19567442-19567539)
chr5 (679-774)||(32252916-32253011)
chr5 (708-762)||(24651168-24651222)
chr5 (708-757)||(5891084-5891133)
chr5 (681-774)||(38040271-38040363)
chr5 (681-760)||(6447491-6447571)
chr5 (721-776)||(6291040-6291095)
chr5 (677-716)||(33756314-33756353)
chr5 (687-774)||(41405085-41405172)
chr5 (703-776)||(27278748-27278822)
chr5 (679-757)||(31934889-31934967)
chr5 (686-774)||(20186876-20186962)
chr5 (687-760)||(38426772-38426844)
[»] scaffold0039 (1 HSPs)
scaffold0039 (73-175)||(8745-8847)
[»] scaffold0011 (1 HSPs)
scaffold0011 (679-776)||(19390-19487)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-175)||(367369-367450)
[»] scaffold0013 (1 HSPs)
scaffold0013 (679-734)||(245493-245548)


Alignment Details
Target: chr4 (Bit Score: 532; Significance: 0; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 73 - 776
Target Start/End: Complemental strand, 11863850 - 11863148
Alignment:
Q  73 catcaataaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcact 172  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  11863850 catcaataaacaacattcattcatttaacacaatttacatttaaagacgattaaacattttcacctagttaatcaagtcattatgtgcatatcaatcact 11863751  T
Q  173 aattcatcatattaccaaagtccgcnnnnnnnnnnnnncacaaacaattacaaagataacaaccgttggtggtggaccacgtcgtaaactacaatgtcaa 272  Q
    |||| ||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11863750 aatttatcatattaccaaagtccgcaaaaaaggaaaaacacaaacaattacaaagataacaaccgttggtggtggaccacgtcgtaaactacaatgtcaa 11863651  T
Q  273 aagaagtatattctatagacatgtaccctacattcatatattttctggaacagcctgttatggaatcacaatcttcacaatattattacaacacaatgga 372  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |    
T  11863650 aagaagtatattctatagacatgtaccctacattcatatattttctggaacagcctgttatggaatcacaatcttaccaatattattacaacacaatgca 11863551  T
Q  373 aaaatgtaacgttaacaacatagccagtagccggcaacaaaagaaagacattatagtattgtagcaaagttgtattgtgtacctgtctcttttaaataaa 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11863550 aaaatgtaacgttaacaacatagccagtagccggcaacaaaagaaagacattatagtattgtagcaaagttgtattgtgtacctgtctctttt-aataaa 11863452  T
Q  473 aacaataaaaaggttttattttttgtcttctcgcatatagaaatggacccctcacacagctttgtttttattcttccttttcttgtttgatcaagctaac 572  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11863451 aacaataaaaaggttttattttttgtcttctcgcacatagaaatggacccctcacacagctttgtttttattcttccttttcttgtttgatcaagctaac 11863352  T
Q  573 caaagctgctggtttattcttcttcgctgtctcattctactgatattctcaattgatannnnnnncatagattccatctatagaaagtatttctattctc 672  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||| |||  |    
T  11863351 caaagctgctggtttattcttcttcgctgtctcattctactgatattctcaattgatatttttttcatagattccatctatagaaagtatttccattgcc 11863252  T
Q  673 cttgtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaa 772  Q
    | | | | |||| |||| |||| ||| ||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||| |||||||| |||||    
T  11863251 cctttgagcatagctcaattggtagggacatgcactattatatgcagggactgaggttcgaacttcagacaccctacttattcaccttgataaaagtgaa 11863152  T
Q  773 ttct 776  Q
    ||||    
T  11863151 ttct 11863148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 673 - 776
Target Start/End: Original strand, 47416465 - 47416568
Alignment:
Q  673 cttgtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaa 772  Q
    ||||| |||||  ||||||||| ||||  ||| | ||||||||| | |||||| ||||||||  || ||||||| ||||||||||||||| |||||||||    
T  47416465 cttgtgaacatggctcagttggtaggataatggattattatatgcaggggttggggttcgaatctcggacaccccacttattcactttgaaaaaggtgaa 47416564  T
Q  773 ttct 776  Q
    ||||    
T  47416565 ttct 47416568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 676 - 776
Target Start/End: Complemental strand, 12585654 - 12585554
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattc 775  Q
    ||||||||||||||||||||||| ||||||| | |||||||||||||  |  ||||||||  |  |||||  |||||||||  |||| ||||||||||||    
T  12585654 gtaaacataactcagttggcagggacatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaattc 12585555  T
Q  776 t 776  Q
    |    
T  12585554 t 12585554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 676 - 755
Target Start/End: Complemental strand, 23935121 - 23935042
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattc 755  Q
    |||||||||  |||||||||||| |||| || |||| ||| |||| ||| |||||||||| |||||||||| ||||||||    
T  23935121 gtaaacatagttcagttggcagggacatacattattgtatataagagttaaggttcgaacctcagacaccccacttattc 23935042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 49039535 - 49039440
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| | ||||||| | ||  || |||||||||  | ||||||| |||||||||| |||| |||||||||||||    
T  49039535 catagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattct 49039440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 727 - 760
Target Start/End: Complemental strand, 33708833 - 33708800
Alignment:
Q  727 ggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||||||||||||||||||||||||||||    
T  33708833 ggttcgaacttcagacaccctacttattcacttt 33708800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 682 - 754
Target Start/End: Original strand, 42432014 - 42432086
Alignment:
Q  682 ataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttatt 754  Q
    ||||||||||||||||| ||||||| | ||||||| | || ||| |||||||||| |  ||||||||||||||    
T  42432014 ataactcagttggcagggacatgcattgttatatgcagggattggggttcgaactccgaacaccctacttatt 42432086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 20610744 - 20610839
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| | ||||||| | |||  | |||||||||| | |||| || |||||||||| || | |||||||||||||    
T  20610744 catagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaattct 20610839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 33359822 - 33359917
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| |||||||| || | |||| || | ||||||| |||||| |||||||||||    ||||||| |||||||||| |||| |||||||||||||    
T  33359822 catagctcagttgacatggacattcattgttatatgcaagggtcgaggttcgaaccctggacaccccacttattcaccttgaaaaaggtgaattct 33359917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 41492588 - 41492494
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| ||||||||| | |||  | ||||||||| |  ||||||| ||||||| || |||| |||||||||||||    
T  41492588 catagctcagttggcagggacatgcattattatatgcaggggccggggttcgaacct-ggacaccccacttatttaccttgaaaaaggtgaattct 41492494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 760
Target Start/End: Original strand, 52031216 - 52031291
Alignment:
Q  686 ctcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||||||||||| |||| || |||||| | |||| | |||||||||  ||||||||| |||||||||||||    
T  52031216 ctcagttggcaggaacaatgcattagtatatgcaggggtcggggttcgaaccccagacaccccacttattcacttt 52031291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 776
Target Start/End: Original strand, 6202610 - 6202703
Alignment:
Q  683 taactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||  ||||||  | || |||||| ||| |  |||||||||  | |||||||||||||||||  |||| |||||||||||||    
T  6202610 taactcagttggcagcgacatgctttgttttatgtaggggctagggttcgaaccccggacaccctacttattcatcttgaaaaaggtgaattct 6202703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 776
Target Start/End: Complemental strand, 6481668 - 6481579
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| |||||||  |||||||| |  ||  ||||||||||| |||||| ||| |||||||||| || | || ||||||||||    
T  6481668 tcagttggcagggacatgcatgattatatgcagaggccgaggttcgaacctcagacgccccacttattcaccttaaaaatggtgaattct 6481579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 762
Target Start/End: Original strand, 29785155 - 29785236
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    |||| ||||||||||||| |||| |||| | ||||||| ||| || |||||||||  | ||||||| |||||||||| ||||    
T  29785155 catagctcagttggcagggacatacactgtaatatgtaggggctggggttcgaaccccggacaccccacttattcaccttga 29785236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 39449403 - 39449499
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| ||||||| ||||||| |||||||||| |||| |||||| |||||  || | |||  |||||||||| || | ||| |||||||||    
T  39449403 aacataactcagctggcagggacatgcattattatatgt-agggctgaggtacgaaccccaaatacctcacttattcaccttaaaaaatgtgaattct 39449499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 746
Target Start/End: Complemental strand, 52757335 - 52757275
Alignment:
Q  686 ctcagttggcaggaacat-gcactattatatgtaagggttgaggttcgaacttcagacaccc 746  Q
    ||||||||||||||| || ||| ||||||||| | |||||| ||||||||||||||||||||    
T  52757335 ctcagttggcaggaatattgca-tattatatgcaggggttggggttcgaacttcagacaccc 52757275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 4e-31; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 73 - 178
Target Start/End: Complemental strand, 30060071 - 30059966
Alignment:
Q  73 catcaataaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcact 172  Q
    |||||| |||||||| |||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||| ||| ||| |||||||||||||||    
T  30060071 catcaagaaacaacaatcattcatttaacataatttgcatttaaagaagattaagcattttcacttagttaatcaattcaacatatgcatatcaatcact 30059972  T
Q  173 aattca 178  Q
    ||||||    
T  30059971 aattca 30059966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 776
Target Start/End: Complemental strand, 4045718 - 4045629
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||| |||| ||||||| | ||||||| | |||| |||||||||||||| ||||||| |||||||||  |||| |||||||||||||    
T  4045718 tcagttgacagggacatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattct 4045629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 689 - 776
Target Start/End: Original strand, 23025910 - 23025997
Alignment:
Q  689 agttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||| |||||||| ||||| |||||  | |||||||| ||||  ||||||||| ||||||||||||| | |||||||||||||    
T  23025910 agttggcagaaacatgcattattaaatgtagcgattgaggtttgaaccccagacaccccacttattcactttaaaaaaggtgaattct 23025997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 23237367 - 23237462
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| ||||||||||| |||| |  ||||||||| | |||| || || ||||||| |||| |||||||||||||    
T  23237367 catagctcagttggcagggacatgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcacgttgaaaaaggtgaattct 23237462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 685 - 756
Target Start/End: Complemental strand, 34407176 - 34407105
Alignment:
Q  685 actcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||||||||||||| ||||||| ||||||||| | |||||| |||||||||  ||||||||| |||||||||    
T  34407176 actcagttggcagggacatgcattattatatgcaggggttggggttcgaaccccagacaccccacttattca 34407105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 681 - 771
Target Start/End: Complemental strand, 31108850 - 31108760
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtga 771  Q
    |||||||||||||||||| |||||||  |||||||| | ||| || |||||||||   |||||||| |||||||||| |||| ||||||||    
T  31108850 cataactcagttggcagggacatgcataattatatgcaggggctggggttcgaacccgagacaccccacttattcaccttgaaaaaggtga 31108760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 36277167 - 36277256
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| |||||||| ||||||||||||||||||  ||||||||  || |||||||| |||||||| ||   |||||||||||||    
T  36277167 ctcagttggcag-aacatgcattattatatgtaagggttggagttcgaaccccaaacaccctatttattcacgttacaaaaggtgaattct 36277256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 760
Target Start/End: Complemental strand, 42824076 - 42823996
Alignment:
Q  681 cataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||||||| ||| | || ||||||||  |||||||| ||||||||  || |||||||||||||||||||||    
T  42824076 cataactcagttggcaggcacaatacattattatatacaagggttggggttcgaatctcggacaccctacttattcacttt 42823996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 24160618 - 24160523
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||||  ||||||||| ||||||| | |||| | |||||||||  | ||||| | ||||||||||||| | |||| ||||||||    
T  24160618 cataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaaccccggacactccacttattcactttcaaaaagttgaattct 24160523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 711 - 774
Target Start/End: Original strand, 26365485 - 26365547
Alignment:
Q  711 tatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    |||||||| ||||||| ||||||||| |||||| || |||||||||| ||||||||||||||||    
T  26365485 tatatgtaggggttgatgttcgaactccagacatcccacttattcac-ttgataaaggtgaatt 26365547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 760
Target Start/End: Complemental strand, 28226280 - 28226198
Alignment:
Q  679 aacataactcagttggcaggaac-atgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||||||||||||||||| ||||| ||||||||| | |||||| ||||||||   |  |||||| |||||||||||||    
T  28226280 aacataactcagttggcaggaacaatgcattattatatgcaggggttggggttcgaatcccgaacaccccacttattcacttt 28226198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 774
Target Start/End: Original strand, 16999933 - 17000026
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    |||||||| ||||||||| ||||||| ||||||||||| |||  |  ||||||||| ||||||||| || ||||||  |||| || ||||||||    
T  16999933 cataactctgttggcagggacatgcattattatatgtaggggccggagttcgaactccagacaccccacatattcatcttgaaaagggtgaatt 17000026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 32080058 - 32080155
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||| ||||||| |||||  |||| | ||||||||||| |||| | |||||||||  |  |||||| |||||||||| |||| |||||||||||||    
T  32080058 aacatagctcagtttgcaggggcatgaattattatatgtatgggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaattct 32080155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 19137624 - 19137719
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||||||||||| | ||||||| | |||  |||||||||||  ||||||||| | |||||| | |||| ||| | |||||||    
T  19137624 catagctcagttggcaggaacatgcattgttatatgcaggggccgaggttcgaaccccagacaccccatttattctccttgaaaaaagagaattct 19137719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 28951871 - 28951966
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||||  ||||||| ||||||||| | ||||   |||||||||  |  |||||| |||||||||| |||| ||| |||||||||    
T  28951871 cataactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaattct 28951966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 33533208 - 33533303
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||||  ||||||| | |||||||||  ||||| |||||||||   ||||| || |||||||||| || | ||| |||||||||    
T  33533208 cataactcagttggcagagacatgcattgttatatgtagtggttggggttcgaaccatagacatcccacttattcaccttaaaaaaagtgaattct 33533303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 735
Target Start/End: Complemental strand, 3461814 - 3461760
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaac 735  Q
    ||||||||||||| |||| ||||||| | ||||||||| |||||| |||||||||    
T  3461814 cataactcagttgacagggacatgcattgttatatgtaggggttggggttcgaac 3461760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 756
Target Start/End: Complemental strand, 13616166 - 13616089
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||||||||| ||||| ||||  ||||| ||||||||||| |||| |  |||||||| || ||||||| |||||||||    
T  13616166 aacataactcggttggtaggacaatgcattattatatgtaggggtcggagttcgaacctcggacaccccacttattca 13616089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 16985023 - 16985120
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||| |||||||||||  |||| || ||||||||||| |||||  |||| |||| ||  |||| | ||||||||||||| | ||| |||||||||    
T  16985023 aacataattcagttggcagagacattcattattatatgtaggggtttgggtttgaacctcgaacactccacttattcactttaaaaaaagtgaattct 16985120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 757
Target Start/End: Original strand, 43897634 - 43897683
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    ||||||||||| || |||| |||||||| |||||||||| ||||||||||    
T  43897634 tattatatgtagggattgatgttcgaacctcagacaccccacttattcac 43897683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 760
Target Start/End: Original strand, 49146091 - 49146168
Alignment:
Q  683 taactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||| ||||  ||||| ||||||||| | |||| | |||||||||  | ||||||| |||||||||||||    
T  49146091 taactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccggacaccccacttattcacttt 49146168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 776
Target Start/End: Complemental strand, 49299323 - 49299235
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||| |||| |||||||  ||||||||||| || || |||||||||  ||||||| | |||||||||| |||| |||| ||||||||    
T  49299323 tcagttgacagggacatgcataattatatgtaaaggctggggttcgaac-ccagacactccacttattcaccttgagaaagctgaattct 49299235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 676 - 776
Target Start/End: Original strand, 35498398 - 35498497
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattc 775  Q
    |||| |||||||||||||||||| ||||||| ||||||||| | |||||| ||||| |||||| ||||||| ||||||||||||||| ||||||||||||    
T  35498398 gtaagcataactcagttggcagggacatgcattattatatgcaggggttg-ggttcaaacttcggacaccccacttattcactttgaaaaaggtgaattc 35498496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 16814700 - 16814797
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||| ||||||||||| ||||||||| ||||||||||| |||| | |||||||||  ||||||| | ||||||||||||||| ||| |||||||||    
T  16814700 aacatagctcagttggcaagaacatgcattattatatgtaggggtcggggttcgaaccccagacactccacttattcactttgaaaaatgtgaattct 16814797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 173
Target Start/End: Original strand, 9257363 - 9257463
Alignment:
Q  73 catcaataaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcact 172  Q
    |||||| |||||| | || |||||||| |||| |||  ||||||||||||| || ||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  9257363 catcaagaaacaataatccttcatttagcacattttccatttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatcaatcact 9257462  T
Q  173 a 173  Q
    |    
T  9257463 a 9257463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 9312890 - 9312790
Alignment:
Q  73 catcaataaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcact 172  Q
    |||||| |||||| | || |||||||| |||| |||  ||||||||||||| || ||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  9312890 catcaagaaacaataatccttcatttagcacattttccatttaaagacgatcaagcattttcacctagttaatcaattcaacatatgcatatcaatcact 9312791  T
Q  173 a 173  Q
    |    
T  9312790 a 9312790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 676 - 776
Target Start/End: Complemental strand, 24579381 - 24579281
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattc 775  Q
    |||| |||| |||||||  |||||||||||| ||||||||| | ||| |||| |||||||  ||||||||| |||||||||| |||| ||||||||||||    
T  24579381 gtaagcatatctcagtttacaggaacatgcattattatatgcaggggatgagattcgaaccccagacaccccacttattcaccttgaaaaaggtgaattc 24579282  T
Q  776 t 776  Q
    |    
T  24579281 t 24579281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 114 - 176
Target Start/End: Complemental strand, 11231071 - 11231009
Alignment:
Q  114 taaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcactaatt 176  Q
    |||||||| |||| ||||||||| || |||||||| |||||||||||||||||||||||||||    
T  11231071 taaagacggttaatcattttcacctaattaatcaattcatcatgtgcatatcaatcactaatt 11231009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 20465526 - 20465616
Alignment:
Q  81 aacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcac 171  Q
    ||||| ||||||||||||| ||||| ||| |||||||||| |||||  ||||||||  ||| ||||||  |||||||||||||||||||||    
T  20465526 aacaatattcattcatttagcacaaattgcatttaaagactattaaggattttcaccaagtaaatcaatacatcatgtgcatatcaatcac 20465616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 44409206 - 44409300
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| ||||| ||||||| ||||||||| |||||| | |||||||||  |  |||||| |||||||||| |||| |||||||||||||    
T  44409206 cataactcagttagcagggacatgcattattatatgcaagggtcggggttcgaac-ccgaacaccccacttattcaccttgaaaaaggtgaattct 44409300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 762
Target Start/End: Original strand, 1513492 - 1513573
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    ||||| |||||||||||| ||||||| | ||||||||| ||||||||||||||||  |  |||||| |||||||||| ||||    
T  1513492 cataaatcagttggcagggacatgcattgttatatgtaggggttgaggttcgaacaccgaacaccccacttattcaccttga 1513573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 3246576 - 3246484
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| |||||||| |||| ||||||| | |||||||   ||| ||||||||||||| |  |||||||||||||| ||||||| |||||||||||||    
T  3246576 catagctcagttgacagggacatgcattgttatatg---gggctgaggttcgaactccgaacaccctacttatttactttgaaaaaggtgaattct 3246484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 16203013 - 16202957
Alignment:
Q  80 aaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcac 136  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||||||  ||||||||    
T  16203013 aaacaacaatcattcatttagcacaatttggatttaaagacgattaagaattttcac 16202957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 776
Target Start/End: Complemental strand, 25711220 - 25711127
Alignment:
Q  682 ataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||  ||||  ||||| ||||||||||| |||  | ||||||||| || ||||||| ||||||||||||| ||||| |||||||||    
T  25711220 ataactcagttgataggataatgcattattatatgtaggggccggggttcgaacctcggacaccccacttattcacttt-ataaatgtgaattct 25711127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 760
Target Start/End: Complemental strand, 41417366 - 41417286
Alignment:
Q  681 cataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||| ||||||||||||||||| ||||  |||||||| | |||| | |||||||||  ||||||||| |||||||||||||    
T  41417366 catagctcagttggcaggaacagtgcatcattatatgcaggggtcggggttcgaaccccagacaccccacttattcacttt 41417286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 708 - 751
Target Start/End: Complemental strand, 32250404 - 32250361
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctactt 751  Q
    |||||||| ||||||||||||||||||| | |||||||||||||    
T  32250404 tattatatataagggttgaggttcgaaccttagacaccctactt 32250361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 755
Target Start/End: Complemental strand, 924382 - 924308
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattc 755  Q
    |||| ||||||||| ||||   |||| ||||||||||| |||||| |||||||||  ||||||||| ||||||||    
T  924382 catagctcagttggtaggatagtgcattattatatgtaggggttggggttcgaaccccagacaccccacttattc 924308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 776
Target Start/End: Original strand, 23799306 - 23799400
Alignment:
Q  682 ataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||||||  ||||||| | ||||||| | |||| | | ||||||| || ||||||| |||||||| |||| | |||||| ||||||    
T  23799306 ataactcagttggcagagacatgcattgttatatgcaggggtcgggattcgaacctcggacaccccacttattctctttaaaaaaggttaattct 23799400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 710 - 760
Target Start/End: Complemental strand, 33236328 - 33236278
Alignment:
Q  710 ttatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||| | |||||| |||||||||  |||||||||||||||||||||||    
T  33236328 ttatatgcaggggttggggttcgaacaacagacaccctacttattcacttt 33236278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 679 - 760
Target Start/End: Complemental strand, 41507812 - 41507730
Alignment:
Q  679 aacataactcagttggcaggaac-atgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||||| |||||| ||||| | |||||| ||||||| |  |||||||| ||| |||||| | |||||||||||    
T  41507812 aacataactcagttggtaggaacaatgcattgttatatataagggtcggagttcgaacctcaaacaccccatttattcacttt 41507730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 757
Target Start/End: Complemental strand, 15716720 - 15716671
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    ||||||||| |||||| | |||||||||||| ||||||| ||||||||||    
T  15716720 tattatatgcaagggtcggggttcgaacttcggacaccccacttattcac 15716671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 762
Target Start/End: Original strand, 37917397 - 37917478
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    |||| ||||||||| |||||||||||  |||||||| | |||||| ||||| |||   | |||||| |||||||||||||||    
T  37917397 catagctcagttggtaggaacatgcataattatatgcaggggttggggttcaaaccctaaacaccccacttattcactttga 37917478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 716
Target Start/End: Original strand, 43209404 - 43209441
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatg 716  Q
    |||||||||||||||||||||||||||| | |||||||    
T  43209404 aacataactcagttggcaggaacatgcattgttatatg 43209441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 39334971 - 39334876
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||||| ||||||| ||||||||  | ||| || |||||||||| |||||| || ||||||||||||||| |||||||||||||    
T  39334971 cataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttgaaaaaggtgaattct 39334876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 9961156 - 9961254
Alignment:
Q  80 aaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcactaattca 178  Q
    ||||||||||||||||||||||| ||||  ||||||||||||||||| |||||| ||  ||||||| ||  | |||| |||||||||||||||||||||    
T  9961156 aaacaacattcattcatttaacataattcatatttaaagacgattaagcattttaaccaagttaataaatacctcatatgcatatcaatcactaattca 9961254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 34107279 - 34107374
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||| |  |||||||| | ||||||||||||||||| ||||||||| |||||||||| |||| ||| |||||||||    
T  34107279 catagctcagttggcagggacatgtataattatatgcaggggttgaggttcgaactccagacaccccacttattcaccttgaaaaatgtgaattct 34107374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 22355088 - 22355183
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||| | ||||||| | |||| || | |||||||| |||||||| ||||||||| |||||||||| |||  |||||||||||||    
T  22355088 catagctcagttggcaaggacatgcattgttatgtgcaggggttgagtttcgaactccagacaccccacttattcaccttgcaaaaggtgaattct 22355183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 710 - 760
Target Start/End: Original strand, 36190088 - 36190138
Alignment:
Q  710 ttatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||||||||    
T  36190088 ttatatgtaagggtcgaggttcgaacctcagacaccccacttattcacttt 36190138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 757
Target Start/End: Original strand, 3179329 - 3179405
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||| || |  ||||| ||||||||| | |||| ||||||||||| |||||||||| ||||||||||    
T  3179329 cataactcagttggtagaacaatgcattattatatgcaggggtcgaggttcgaacctcagacaccccacttattcac 3179405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 708 - 776
Target Start/End: Complemental strand, 22014715 - 22014647
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||| ||||||||||||||||  ||||||||| ||||||| || |||| ||| |||||||||    
T  22014715 tattatatgtaggggttgaggttcgaaccccagacaccccacttatttaccttgaaaaatgtgaattct 22014647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 700 - 776
Target Start/End: Original strand, 37123210 - 37123286
Alignment:
Q  700 acatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||| ||||||||| | |||| ||| |||||||| | ||||||||||||||||||||| | |||| ||||||||    
T  37123210 acatgcattattatatgcaggggtcgagattcgaactccggacaccctacttattcactttaaaaaagatgaattct 37123286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 757
Target Start/End: Original strand, 10262744 - 10262820
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||| ||||  ||||| ||||||||| | |||| | |||||||||  ||||||||| ||||||||||    
T  10262744 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcac 10262820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 776
Target Start/End: Complemental strand, 20942192 - 20942104
Alignment:
Q  688 cagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||| |||||||  |||||||||| ||| ||  ||||||||  ||||||||  |||||||||| |||| ||| |||||||||    
T  20942192 cagttggcagggacatgcataattatatgtaggggatggagttcgaaccccagacacctcacttattcaccttgaaaaaagtgaattct 20942104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 686 - 762
Target Start/End: Original strand, 32288386 - 32288462
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    |||||||| ||| |||||||| ||||||||||| || | | ||||||||| || ||||||| |||||||||| ||||    
T  32288386 ctcagttgacagaaacatgcattattatatgtagggatcggggttcgaacctcggacaccccacttattcaccttga 32288462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 730 - 774
Target Start/End: Original strand, 32677383 - 32677427
Alignment:
Q  730 tcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||    
T  32677383 tcgaatttcagacaccccacttattcactttgaaaaaggtgaatt 32677427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 760
Target Start/End: Complemental strand, 15392301 - 15392222
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||| ||||  ||||| ||||||||||| | |  ||||||||||| || ||||||  |||||||||||||    
T  15392301 cataactcagttggtaggacaatgcattattatatgtaggagacgaggttcgaacctcggacacctcacttattcacttt 15392222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 678 - 757
Target Start/End: Complemental strand, 18386905 - 18386826
Alignment:
Q  678 aaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    ||||||| |||| |||| ||||  ||||| ||||||||||| ||| || |||||||||| | ||||||| ||||||||||    
T  18386905 aaacatagctcaattggtaggacaatgcattattatatgtaggggctggggttcgaactccggacaccccacttattcac 18386826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 700 - 774
Target Start/End: Complemental strand, 4529834 - 4529760
Alignment:
Q  700 acatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||||| ||||||||| | |||| |  ||||||||| |  |||||| ||||||||||||||| |||||||||||    
T  4529834 acatgcattattatatgcaggggtcggagttcgaactccgaacaccccacttattcactttgaaaaaggtgaatt 4529760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 776
Target Start/End: Complemental strand, 14307779 - 14307689
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||| ||| ||||||| | ||||||| | |||| |||||||||||  |  |||||| ||||||||||||| | ||| |||||||||    
T  14307779 ctcagttggtagggacatgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaattct 14307689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 682 - 760
Target Start/End: Complemental strand, 16028197 - 16028119
Alignment:
Q  682 ataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||||||| ||||  ||||| ||||||||| |  ||| | |||||||||| |||||| || |||||||||||||    
T  16028197 ataactcagttggtaggacaatgcattattatatgcagtggtcggggttcgaactccagacatcccacttattcacttt 16028119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 25071220 - 25071310
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| |||||||| ||||||| ||||||||| ||||||   |||||||||  | ||||||  ||||| || |||||| |||||||||||||    
T  25071220 ctcaattggcagggacatgcattattatatggaagggtcagggttcgaaccacggacaccacacttactcgctttgaaaaaggtgaattct 25071310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 776
Target Start/End: Original strand, 1244580 - 1244669
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| |||| || |  |||||| | |||| | |||||||||  | ||||||| |||||||||| |||| |||||||||||||    
T  1244580 tcagttggcagggacatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattct 1244669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 676 - 760
Target Start/End: Complemental strand, 32527173 - 32527088
Alignment:
Q  676 gtaaacataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||| ||||||||||||| ||| |||| ||||||||| | |||  | |||||||||  |||||| || |||||||||||||    
T  32527173 gtaaacatagctcagttggcagggacaatgcattattatatgcaggggccggggttcgaaccccagacaacccacttattcacttt 32527088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 9769670 - 9769575
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| ||||||||||| || ||| |||||||||  | ||||||| |||||||||| |||| |||||||||||||    
T  9769670 catagctcagttggcagggacatgcattattatatgtagggattggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattct 9769575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 195054 - 195144
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||| |||||||  |||||||| | ||| ||||||||| ||  ||||||||| |||||||||| |||| |||||||||||||    
T  195054 ctcagttggcagggacatgcataattatatgcaggggctgaggttcgtaccccagacaccccacttattcaccttgaaaaaggtgaattct 195144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 9768899 - 9768804
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| | ||||||| | |||| | |||||||||  | ||||||| |||||||||| |||| |||||||||||||    
T  9768899 catagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaattct 9768804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 774
Target Start/End: Original strand, 50575911 - 50575999
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||||||| ||| ||||||| | ||||||| ||||| || ||||||||| |||||||||  |||||||||| || | |||||||||||    
T  50575911 ctcagttggaagggacatgcattgttatatgcaagggctggggttcgaacctcagacacctcacttattcaccttaaaaaaggtgaatt 50575999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 3341826 - 3341731
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||||||| ||||||| ||||||||| | |||  | || ||||||  | ||||||| |||||||||| |||| |||||||||||||    
T  3341826 catagctcagttggcagggacatgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcaccttgaaaaaggtgaattct 3341731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 681 - 751
Target Start/End: Original strand, 1580834 - 1580904
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctactt 751  Q
    |||||||||||||||||| |||| || | ||||||| |||||||||||||||||   ||||||||| ||||    
T  1580834 cataactcagttggcagggacatacaatgttatatgcaagggttgaggttcgaatcccagacaccccactt 1580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 41677070 - 41677160
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||  |||| || |||||||||   |||| | |||||||||| | ||||||| |||||||||| |||| |||||||||||||    
T  41677070 ctcagttggcagagacattcattattatatgcgggggtcggggttcgaactccggacaccccacttattcaccttgaaaaaggtgaattct 41677160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 760
Target Start/End: Original strand, 5684121 - 5684205
Alignment:
Q  675 tgtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||| |||| ||||||||||||  ||||||| ||||||||| | ||||| ||| | |||| |||||||||| |||||||||||||    
T  5684121 tgtaagcatagctcagttggcagagacatgcattattatatgcaggggtt-aggattgaacctcagacaccccacttattcacttt 5684205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 776
Target Start/End: Original strand, 13941330 - 13941419
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||| | ||||||| | ||||||| | || | |||||||||||||| ||||||| |||||||||  |||| ||| |||||||||    
T  13941330 tcagttggcaaggacatgcattgttatatgcagggttcgaggttcgaacttcggacaccccacttattcatcttgaaaaaagtgaattct 13941419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 19866478 - 19866575
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||| |||||||| ||||||| || |||||||| |||  || |||  |||| | ||||||| |||||||||| || | |||||||||||||    
T  19866478 aacataactcaattggcagggacatgcattagtatatgtaggggccgaagtttaaactccggacaccccacttattcaccttaaaaaaggtgaattct 19866575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 761
Target Start/End: Original strand, 50327957 - 50328010
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttg 761  Q
    ||||||||||||| ||||| ||||||| ||| ||||||| ||||||||||||||    
T  50327957 tattatatgtaagagttgaagttcgaatttcggacaccccacttattcactttg 50328010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 757
Target Start/End: Complemental strand, 12073167 - 12073091
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||| ||||  ||||| |||||||| ||||| | |||||||||||| | ||||||| | ||||||||    
T  12073167 cataactcagttggtaggataatgcattattatatctaaggatcgaggttcgaactccggacacccaatttattcac 12073091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 757
Target Start/End: Complemental strand, 15774402 - 15774326
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||| ||||  ||||| ||||||||||| |||| | |||||||||  | ||||||| ||||||||||    
T  15774402 cataactcagttggtaggacaatgcattattatatgtaggggtcggggttcgaaccccggacaccccacttattcac 15774326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 757
Target Start/End: Complemental strand, 49251485 - 49251409
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||| ||||  ||||| ||||||||| | |||| | |||||||||  ||||||||| ||||||||||    
T  49251485 cataactcagttggtaggacaatgcattattatatgcaggggtcggggttcgaaccccagacaccccacttattcac 49251409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 736
Target Start/End: Complemental strand, 7182984 - 7182929
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaact 736  Q
    ||||| |||||| |||||   ||||| |||||||||||||||||||||||||||||    
T  7182984 cataattcagttagcagggcaatgcattattatatgtaagggttgaggttcgaact 7182929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 719 - 774
Target Start/End: Complemental strand, 9410380 - 9410325
Alignment:
Q  719 agggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||||||| ||||||| |||||||||| |||||||||  |||| |||||||||||    
T  9410380 agggttgagattcgaacctcagacaccccacttattcatcttgaaaaaggtgaatt 9410325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 9931092 - 9931187
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| ||||| ||||||| ||||||||| ||| | ||  ||||||||  || |||||| |||||||||| || |  ||||||||||||    
T  9931092 cataactcagttagcagggacatgcattattatatgcaagagctggagttcgaaccccaaacaccccacttattcaccttaaagaaggtgaattct 9931187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 12553203 - 12553294
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgagg-ttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||| ||||||||||| | ||||||| | |||  | || |||||||  | ||||||| ||||||||||||||| |||||||||||||    
T  12553203 ctcagttggtaggaacatgcattgttatatgcaggggccgggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaattct 12553294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 687 - 757
Target Start/End: Original strand, 3569055 - 3569125
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||| ||||||| | ||||||||| ||||   |||||||| |||||||| |||| ||||||||    
T  3569055 tcagttggcagggacatgcattgttatatgtaggggtcagggttcgaatttcagacatcctatttattcac 3569125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 774
Target Start/End: Complemental strand, 7015777 - 7015683
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctactt-attcactttgataaaggtgaatt 774  Q
    |||| |||||||||| || ||||||| | ||||||||| ||| ||||||||||||| |  |||||| |||| |||||| |||| ||| |||||||    
T  7015777 catagctcagttggctgggacatgcattgttatatgtaggggctgaggttcgaactccgaacaccccacttaattcaccttgaaaaatgtgaatt 7015683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 735
Target Start/End: Complemental strand, 11802110 - 11802056
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaac 735  Q
    |||||||||||||| ||||  ||||| ||||||||||| |||||| |||||||||    
T  11802110 cataactcagttggtaggacaatgcattattatatgtaggggttggggttcgaac 11802056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 735
Target Start/End: Complemental strand, 23758343 - 23758289
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaac 735  Q
    |||| |||||||||||| ||| |||| ||||||||| | ||||||||||||||||    
T  23758343 catagctcagttggcagaaacgtgcattattatatgcaggggttgaggttcgaac 23758289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 676 - 734
Target Start/End: Complemental strand, 28354202 - 28354144
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa 734  Q
    ||||||||| |||||||||| ||||| |||| ||||||||||| |||  ||||||||||    
T  28354202 gtaaacatatctcagttggctggaacgtgcattattatatgtaggggccgaggttcgaa 28354144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 725 - 774
Target Start/End: Original strand, 24889189 - 24889238
Alignment:
Q  725 gaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    |||||||||||| |  |||||| ||||||||||||||| |||||||||||    
T  24889189 gaggttcgaactccgaacaccccacttattcactttgaaaaaggtgaatt 24889238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 776
Target Start/End: Complemental strand, 48565239 - 48565142
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||| ||||||||||||| | |  || | ||||||| ||||  | || ||||||| || ||||||| ||||||| ||||||| |||||||||||||    
T  48565239 aacatatctcagttggcagggataaacattgttatatgcaaggactaagtttcgaacctcggacaccccacttatttactttgaaaaaggtgaattct 48565142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 683 - 776
Target Start/End: Complemental strand, 50199564 - 50199471
Alignment:
Q  683 taactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| ||| ||||||| | ||||||| | |||  | |||||||||  | ||||||| |||||||||| |||| |||||| ||||||    
T  50199564 taactcagttggtagggacatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaattct 50199471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 8e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 681 - 762
Target Start/End: Complemental strand, 39432418 - 39432337
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    |||| ||||||||||||| ||||||| | ||||||| | |||||| ||||||||| |||||||||| |||||||||||||||    
T  39432418 catagctcagttggcagggacatgcaatgttatatgcaggggttggggttcgaacctcagacaccccacttattcactttga 39432337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 686 - 776
Target Start/End: Original strand, 11900576 - 11900665
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||||||||||| ||||||||| | ||||||||||| ||||  |||| |||| |||||||||  |||| |||||||||||||    
T  11900576 ctcagttggcaggaacatgcattattatatgcaggggttgaggtttgaac-acagataccccacttattcatcttgaaaaaggtgaattct 11900665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 7345433 - 7345528
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||||| ||||||| ||||||||| | |||| | | ||| |||| || |||||| |||||||||| || | |||||||||||||    
T  7345433 cataactcagttggcagggacatgcattattatatgcaggggtcgggcttccaactccaaacaccccacttattcaccttaaaaaaggtgaattct 7345528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 756
Target Start/End: Complemental strand, 8740746 - 8740671
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||||||||||||| ||||  ||||| ||||||||| | ||| ||||||||||||| | |||||||||||||||||    
T  8740746 cataactcagttggtaggacaatgcagtattatatgcaggggctgaggttcgaactccggacaccctacttattca 8740671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 25470936 - 25470841
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||| |||||||||||| ||||||||  | |||| | ||||||||| || ||||||| | |||||||| ||||  ||||||||||||    
T  25470936 cataactcagttgacaggaacatgcattattatattcatgggtcggggttcgaacctcggacaccccatttattcaccttgaagaaggtgaattct 25470841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 757
Target Start/End: Complemental strand, 43875067 - 43874991
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||  ||||  ||||| ||||||||||| ||| ||||||||||||  ||||||||| ||||||||||    
T  43875067 cataactcagttgataggacaatgcattattatatgtaggggctgaggttcgaacaccagacaccccacttattcac 43874991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 686 - 760
Target Start/End: Complemental strand, 35301249 - 35301174
Alignment:
Q  686 ctcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||||||| ||| |||| ||||||||| | |||| | |||||||||| | |||||||||||||||||||||    
T  35301249 ctcagttggcagggacaatgcattattatatgcaggggtcggggttcgaactccggacaccctacttattcacttt 35301174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 679 - 776
Target Start/End: Original strand, 43554452 - 43554550
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa-cttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||| ||||||||||||  |||| || | ||||||||| |||||| |||||||| |  | |||| |||||||||||||||||| |||| ||||||||    
T  43554452 aacatagctcagttggcagcgacatccattgttatatgtaggggttggggttcgaaccccctgacatcctacttattcactttgaaaaagatgaattct 43554550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 756
Target Start/End: Complemental strand, 36633716 - 36633635
Alignment:
Q  676 gtaaacataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||||||||| ||||||||||| |||| |||| | ||||||||| |||||||||||| |||| || | ||||| ||||||||    
T  36633716 gtaaacataaatcagttggcagaaacaatgcattgttatatgtaggggttgaggttcaaactccatatacccttcttattca 36633635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 760
Target Start/End: Original strand, 10292356 - 10292436
Alignment:
Q  681 cataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||| ||||||||||||| ||| |||| ||||||||| | ||| |||| ||||||| || ||||||| |||||||||||||    
T  10292356 catagctcagttggcagggacaatgcattattatatgcaggggctgagattcgaacctcggacaccccacttattcacttt 10292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 760
Target Start/End: Original strand, 22426405 - 22426485
Alignment:
Q  681 cataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    ||||||||| ||| |||| ||| |||| ||||||||||| ||||||||||||||||  | ||||||| | |||||||||||    
T  22426405 cataactcaattgacagggacaatgcattattatatgtaggggttgaggttcgaacccctgacaccccatttattcacttt 22426485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 760
Target Start/End: Complemental strand, 40329695 - 40329615
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttg-aggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||| ||||  ||||| ||||||||| | |||| | |||||||||  || |||||||||||||||||||||    
T  40329695 cataactcagttggtaggataatgcattattatatgcatgggtcggaggttcgaatctcggacaccctacttattcacttt 40329615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 730
Target Start/End: Original strand, 16611596 - 16611639
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggtt 730  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||    
T  16611596 tcagttggcagggacatgcattattatatgtaggggttgaggtt 16611639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 776
Target Start/End: Complemental strand, 22847344 - 22847257
Alignment:
Q  689 agttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||| ||||||| | ||||||| | |||| |||||||||||  || |||||  |||||||||| || | |||||||||||||    
T  22847344 agttggcagggacatgcattgttatatgcaggggtcgaggttcgaaccccacacacctcacttattcaccttaaaaaaggtgaattct 22847257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 757
Target Start/End: Original strand, 24074516 - 24074587
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    ||||||||| ||||  ||||| ||||||||||| ||||||| |||||||| || ||||||  ||||||||||    
T  24074516 ctcagttggtaggacaatgcattattatatgtaggggttgaagttcgaacctcggacacctcacttattcac 24074587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 1044 - 1139
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||| ||| |||||||  |||||||||| ||| || |||||||||  ||||||||| |||||||||| |||| |||||||||||||    
T  1044 catagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattct 1139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 681 - 776
Target Start/End: Complemental strand, 26669749 - 26669654
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||| ||||||||| ||| |||||||  |||||||||| ||| || |||||||||  ||||||||| |||||||||| |||| |||||||||||||    
T  26669749 catagctcagttggtagggacatgcataattatatgtaggggctggggttcgaaccccagacaccccacttattcaccttgaaaaaggtgaattct 26669654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 687 - 776
Target Start/End: Original strand, 6455464 - 6455553
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||| ||| |||| || ||||||||||| ||| || |||||||||| | |||||||||||||||||| |||| |||| ||||||||    
T  6455464 tcagttggtagggacatacattattatatgtatgggctggggttcgaactccggacaccctacttattcaccttgaaaaagatgaattct 6455553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 681 - 776
Target Start/End: Original strand, 9422838 - 9422934
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgat-aaaggtgaattct 776  Q
    |||||||||||||||||| ||||||| | ||||||  ||| | || |||||||||  | ||||||| |||||||||| ||||| |||||||||||||    
T  9422838 cataactcagttggcagggacatgcattgttatatacaagagctggggttcgaacaccggacaccccacttattcaccttgataaaaggtgaattct 9422934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 682 - 776
Target Start/End: Original strand, 4844149 - 4844243
Alignment:
Q  682 ataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||||||||||| ||||||| | ||||||| | |||| | ||||  ||| |||||||||  |||||||||| |||| ||| |||||||||    
T  4844149 ataactcagttggcagggacatgcattgttatatgcaggggtcggggtttaaacctcagacacctcacttattcaccttgaaaaaagtgaattct 4844243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 676 - 734
Target Start/End: Original strand, 30905483 - 30905541
Alignment:
Q  676 gtaaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa 734  Q
    |||| |||||||||||||| ||||||||||| | ||||||||| || ||||||||||||    
T  30905483 gtaaccataactcagttggtaggaacatgcattgttatatgtagggattgaggttcgaa 30905541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 756
Target Start/End: Original strand, 9031769 - 9031846
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||||| ||||||||||||| ||||||| | ||||||| | || |||| ||| |||| |||||||||| |||||||||    
T  9031769 aacatagctcagttggcagggacatgcattgttatatgcagggcttgaagtttgaacctcagacaccccacttattca 9031846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 31411151 - 31411098
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa 734  Q
    ||||||||||||| |||||||||||| ||||||||||| | | |||||||||||    
T  31411151 cataactcagttgacaggaacatgcattattatatgtaggagctgaggttcgaa 31411098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 776
Target Start/End: Original strand, 31595172 - 31595271
Alignment:
Q  677 taaacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||||  ||| ||| |||| ||||||| | |||||| || |||||||| ||||||||||||| ||||  |||||| ||||||| || ||| ||||||    
T  31595172 taaacatagttcaattgtcagggacatgcattgttatatataggggttgagattcgaacttcagataccccgcttatttactttgaaaacggtaaattct 31595271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 681 - 774
Target Start/End: Complemental strand, 14949110 - 14949016
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagaca-ccctacttattcactttgataaaggtgaatt 774  Q
    ||||||||||||||||| ||||| || ||||||||| |  ||| | |||||||||| | |||| ||| | |||||||| |||| |||||||||||    
T  14949110 cataactcagttggcagaaacatacattattatatgcagaggtcggggttcgaactccggacacccccatttattcaccttgaaaaaggtgaatt 14949016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 703 - 756
Target Start/End: Complemental strand, 15289023 - 15288970
Alignment:
Q  703 tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattca 756  Q
    |||| ||||||||||| ||| || |||||||||| ||||||||| |||||||||    
T  15289023 tgcattattatatgtaggggctggggttcgaactccagacaccccacttattca 15288970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 734
Target Start/End: Complemental strand, 20858473 - 20858420
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa 734  Q
    |||||||||||||||||| ||||||| | ||||||| | |||||| ||||||||    
T  20858473 cataactcagttggcagggacatgcattgttatatgcaggggttggggttcgaa 20858420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 776
Target Start/End: Original strand, 30833028 - 30833117
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||| ||||||| | ||||||| | |||| | |||||||||  | ||||||| |||||||| | |||| ||||| |||||||    
T  30833028 tcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaattct 30833117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 178
Target Start/End: Complemental strand, 19567539 - 19567442
Alignment:
Q  82 acaacattcattcatttaacacaatttgtattt-aaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcactaattca 178  Q
    |||| |||| |||||||| ||||||||| |||| ||||||||||||  | ||||||| |||||||||| ||| ||| || ||||||||||||||||||    
T  19567539 acaatattcgttcatttagcacaatttgcattttaaagacgattaagtactttcactaagttaatcaattcaacatatgaatatcaatcactaattca 19567442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 679 - 774
Target Start/End: Complemental strand, 32253011 - 32252916
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    |||||| ||||||||  | | ||||||| ||||||||||| |||| | |||||||||  ||||||||| | ||||||||||||| ||| |||||||    
T  32253011 aacatagctcagttgataaggacatgcattattatatgtaggggtcggggttcgaaccccagacacccaatttattcactttgaaaaatgtgaatt 32252916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 708 - 762
Target Start/End: Original strand, 24651168 - 24651222
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttga 762  Q
    ||||||||||| |||||| ||||||||||||||||| || |||||||||| ||||    
T  24651168 tattatatgtaggggttggggttcgaacttcagacatcccacttattcacattga 24651222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 757
Target Start/End: Original strand, 5891084 - 5891133
Alignment:
Q  708 tattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||||||| |||||||||||| ||||||| ||| ||||||    
T  5891084 tattatatgtaagggttggggttcgaacttcggacaccccactcattcac 5891133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 681 - 774
Target Start/End: Original strand, 38040271 - 38040363
Alignment:
Q  681 cataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    |||| ||||||||||||| ||||||| | ||||||| | |||| ||||||||||| || |||| || |||||||||  |||| |||||||||||    
T  38040271 catagctcagttggcagggacatgcattgttatatgcaggggtcgaggttcgaac-tcggacatcccacttattcatcttgaaaaaggtgaatt 38040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 681 - 760
Target Start/End: Complemental strand, 6447571 - 6447491
Alignment:
Q  681 cataactcagttggcaggaaca-tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||||||||||||| ||| |||| ||||||||| | |||  | ||||||||| || ||||||| |||||||||||||    
T  6447571 cataactcagttggcagggacaatgcattattatatgcaggggccggggttcgaacctcggacaccccacttattcacttt 6447491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 776
Target Start/End: Original strand, 6291040 - 6291095
Alignment:
Q  721 ggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    |||||||||||||||  ||||||||| | |||||||| |||| |||||||||||||    
T  6291040 ggttgaggttcgaaccccagacaccccatttattcacattgaaaaaggtgaattct 6291095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 677 - 716
Target Start/End: Complemental strand, 33756353 - 33756314
Alignment:
Q  677 taaacataactcagttggcaggaacatgcactattatatg 716  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  33756353 taaacataactcagttggcaggaacatacattattatatg 33756314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 774
Target Start/End: Complemental strand, 41405172 - 41405085
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||||| |||| ||||||| | ||||||| |||||| | |||| ||||  ||||||| | | ||||||||||||| |||||||||||    
T  41405172 tcagttgacagggacatgcattgttatatgcaagggtcggggttggaaccgcagacactccaattattcactttgaaaaaggtgaatt 41405085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 703 - 776
Target Start/End: Complemental strand, 27278822 - 27278748
Alignment:
Q  703 tgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgata-aaggtgaattct 776  Q
    |||| ||||||||||| |||| | ||||||||| |||||||||| | |||||||||||  || ||||||||||||    
T  27278822 tgcattattatatgtaggggtcggggttcgaacctcagacaccccatttattcactttcttataaggtgaattct 27278748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 679 - 757
Target Start/End: Complemental strand, 31934967 - 31934889
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcac 757  Q
    |||||||||||||||| ||||  ||||| ||||||||| |  | |||||||||||| ||| ||||||| | ||||||||    
T  31934967 aacataactcagttggtaggacaatgcattattatatgcagagattgaggttcgaatttcggacaccccatttattcac 31934889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 774
Target Start/End: Original strand, 20186876 - 20186962
Alignment:
Q  686 ctcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaatt 774  Q
    ||||||||||||| ||||||| ||||||||| | |||| | ||||  |||  ||||||||| |||||||||| |||| ||| |||||||    
T  20186876 ctcagttggcagggacatgcattattatatgcaggggtcggggtt--aaccccagacaccccacttattcaccttgaaaaaagtgaatt 20186962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 760
Target Start/End: Complemental strand, 38426844 - 38426772
Alignment:
Q  687 tcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcacttt 760  Q
    |||||||| ||||  ||||| ||||||||||| ||| ||||||| ||||  |||||||| ||||||||||||||    
T  38426844 tcagttggtaggataatgcattattatatgta-gggctgaggtttgaaccccagacaccttacttattcacttt 38426772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 175
Target Start/End: Original strand, 8745 - 8847
Alignment:
Q  73 catcaataaacaacattcattcatttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcact 172  Q
    |||||| |||||||||||||||||||| | ||| |   |||||||||||||||| |||||||||  |||||||     |||||||||||||||||| |||    
T  8745 catcaagaaacaacattcattcatttagctcaactcaaatttaaagacgattaagcattttcaccaagttaattggtacatcatgtgcatatcaattact 8844  T
Q  173 aat 175  Q
    |||    
T  8845 aat 8847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 679 - 776
Target Start/End: Complemental strand, 19487 - 19390
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaacttcagacaccctacttattcactttgataaaggtgaattct 776  Q
    ||||||| | |||||||| | ||||||| | ||||||||| |||||| || | |||| || ||||||  | ||||||||||||| |||||||||||||    
T  19487 aacataatttagttggcacggacatgcattgttatatgtaggggttggggattgaacctcggacacctcatttattcactttgaaaaaggtgaattct 19390  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 175
Target Start/End: Complemental strand, 367450 - 367369
Alignment:
Q  94 catttaacacaatttgtatttaaagacgattaaacattttcacttagttaatcaagtcatcatgtgcatatcaatcactaat 175  Q
    |||||| || |||||| | |||||||||||||| |||||||||  |||||||||| |||||| ||| | |||| ||||||||    
T  367450 catttatcataatttgcaattaaagacgattaagcattttcaccaagttaatcaattcatcaagtgaaaatcattcactaat 367369  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 734
Target Start/End: Complemental strand, 245548 - 245493
Alignment:
Q  679 aacataactcagttggcaggaacatgcactattatatgtaagggttgaggttcgaa 734  Q
    ||||||||||||||||||||||| |||||| ||||||| | |||| | ||||||||    
T  245548 aacataactcagttggcaggaacgtgcactgttatatgcaggggtcggggttcgaa 245493  T

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