View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13547_low_24 (Length: 229)
Name: NF13547_low_24
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 31452757 - 31452971
Alignment:
| Q |
1 |
tattaatatgattaactgttaatattgctcatttgatacatacgttctagtaggctgcattaatgctgtgttgatgaaatgattaagtaatgatattttc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31452757 |
tattaatatgattaactgttaaaattgcttatttgatacatacgttctagtaggctgcattaatgctgtgttgatgaaatgattaagtaatgataatttc |
31452856 |
T |
|
| Q |
101 |
tgtaaatagaaattttgagtgtaagatttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaagaactgatgcaatctgga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31452857 |
tgtaaatagaaatttcgagtgtaagatttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaagaactgatgcaatctgga |
31452956 |
T |
|
| Q |
201 |
atccgcccttattat |
215 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
31452957 |
atccgcccttattat |
31452971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 31465850 - 31465899
Alignment:
| Q |
127 |
tttgatgtgtcaataattgagttgctaattggattattttcttgtagtat |
176 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
31465850 |
tttgatgtatcaataattgagttgctaatttgaatattttcttgtagtat |
31465899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 55804232 - 55804174
Alignment:
| Q |
126 |
atttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaaga |
184 |
Q |
| |
|
||||||| | |||||||| |||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
55804232 |
atttgatttttcaataatcgagttgctaattagaatatttacttgtagtattatgaaga |
55804174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 184
Target Start/End: Complemental strand, 55808823 - 55808765
Alignment:
| Q |
126 |
atttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaaga |
184 |
Q |
| |
|
||||||| | |||||||| |||||||||||| | ||||| |||||||||||||||||| |
|
|
| T |
55808823 |
atttgatttttcaataatcgagttgctaattataatatttacttgtagtattatgaaga |
55808765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 29711226 - 29711284
Alignment:
| Q |
126 |
atttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaaga |
184 |
Q |
| |
|
||||||| | |||||||| |||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
29711226 |
atttgatttttcaataatcgagttgctaattagaatatttacttgtagtattatgaaga |
29711284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 184
Target Start/End: Original strand, 15170189 - 15170248
Alignment:
| Q |
125 |
gatttgatgtgtcaataattgagttgctaattggattattttcttgtagtattatgaaga |
184 |
Q |
| |
|
|||||||| | ||||||| |||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
15170189 |
gatttgatttttcaataaccgagttgctaattagaatatttacttgtagtattatgaaga |
15170248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University