View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_5 (Length: 603)
Name: NF13547_low_5
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 561; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 11 - 587
Target Start/End: Complemental strand, 1565482 - 1564906
Alignment:
| Q |
11 |
atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt |
110 |
Q |
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| T |
1565482 |
atgaaagcacgctcaggattgtcaacaattggcgaaagagtcccatcgtaatcaagaaacagtgctattttcttgcctttagcaagattagtaatttgtt |
1565383 |
T |
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| Q |
111 |
cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat |
210 |
Q |
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| T |
1565382 |
cgaaggccccaattgctgatggaaactctagctgcaaaaattataaaagaggaaacgaataaggaaactgcgcaaaccgaacttccacaacaaattacat |
1565283 |
T |
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| Q |
211 |
agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatccatagatattttctt |
310 |
Q |
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| T |
1565282 |
agagttagtactagtatgtgtttcataccagccaggttaaataagcagcatcagcttcagaagatgcaacaccatgaccaatatccatagatattttctt |
1565183 |
T |
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| Q |
311 |
gtgagtaggagacgatgatctcattgcatcaagccaaccattagaacgaacatcatcgagaattcctatcttcttccgtggaatcgttagcgatggaccg |
410 |
Q |
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| T |
1565182 |
gtgagtaggagacgatgatctcattgcatcaagccaaccattagaacgaacatcatcaagaattcctatcttcttccgtggaatcgttagcgatggaccg |
1565083 |
T |
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| Q |
411 |
tgcagaaaagttgaagtatttgtaggagagcatgacagactcgaaggcgtgcctgcaccgagccttgaccttgtcctcgttaaggttgcagtatcagcaa |
510 |
Q |
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| T |
1565082 |
tgcagaaaagttgaagtatttgtaggagagcatgacagactcgaaggcgcgcctgcaccgagccttgatcttgtcctcgttaaggttgcagtatcagcaa |
1564983 |
T |
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| Q |
511 |
tgcgaggagtatgatttgtcttcaggtccattggatccagatctacggagaattttacaagattgcaacaatgtaag |
587 |
Q |
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| T |
1564982 |
tgcgaggagtatgatttgtcttcaggtccattggatccagatctacggagaaatttacaagattgcaacaatgtaag |
1564906 |
T |
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