View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_7 (Length: 519)
Name: NF13547_low_7
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 2046088 - 2046399
Alignment:
| Q |
1 |
acgcgtcttttcgctgttatacttcatattaacacacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagttagag |
100 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2046088 |
acgcatcttttcgctgttatacttcatattaacac--aagtttgttagactacatttacttgaactagaaattaattggataagattgagttagttagag |
2046185 |
T |
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| Q |
101 |
actgatcatatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatacacacttgtatatataccacaccggttta |
200 |
Q |
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| T |
2046186 |
actgatcacatagttaccacagttagtagcataaccatctctacatacatggttattgcatttgtagaatacacacttgtatatataccacacccgttta |
2046285 |
T |
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| Q |
201 |
ttcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgtttaatttttcaatccaacatacaattgattttagtttttgtatttcc |
300 |
Q |
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| T |
2046286 |
ttcattcttatatctcattcttcttctataatcatcatctcacaaagtaatgt---------------aacatacaattgattttagtttttgtatttcc |
2046370 |
T |
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| Q |
301 |
aaatttgatatttccgtggaatatttgat |
329 |
Q |
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| T |
2046371 |
aaatttgatatttccgtggaatatttgat |
2046399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 344 - 512
Target Start/End: Original strand, 2047499 - 2047677
Alignment:
| Q |
344 |
gaaatgtataaaaaggtgacgcgacctaaaacaatttaacatatctctttgtccatcaaactaataattatattttcaaaattccttttgaagtgtacac |
443 |
Q |
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| T |
2047499 |
gaaatgtataaaaaggtgacgcgacctaaaacaatttaacatatctctttgtccatcaaactaataattataactttaaaattccttttgaagtgtacac |
2047598 |
T |
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| Q |
444 |
tccactttg----------tatgggaggatagctacataccaaggtggagcagctaaacagctggaatgatgatgtcca |
512 |
Q |
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| T |
2047599 |
tccactttgtatgggaggatatgggaggatagctacataccaaggtggagcagctaaacagctggaatgatgatgtcca |
2047677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 279 - 346
Target Start/End: Original strand, 2046399 - 2046466
Alignment:
| Q |
279 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggtccaaatgaa |
346 |
Q |
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| T |
2046399 |
tgattttagtttttgtatttccaaatttgatatttccgtggaatatttgattttatggttcaaatgaa |
2046466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 34 - 97
Target Start/End: Original strand, 23509223 - 23509286
Alignment:
| Q |
34 |
acacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtta |
97 |
Q |
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| T |
23509223 |
acacaaatttgctagagtttaattacgtgaactagaagttagttggataagattgagttagtta |
23509286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 96
Target Start/End: Complemental strand, 35987850 - 35987789
Alignment:
| Q |
35 |
cacaagtttgttagagtacaattacttgaactagaaattaattggataagattgagttagtt |
96 |
Q |
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| T |
35987850 |
cacaagtttgttagaggttagttatttgagctagaagttaattgaataagattgagttagtt |
35987789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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