View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_8 (Length: 516)
Name: NF13547_low_8
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 1e-73; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 45014411 - 45014271
Alignment:
| Q |
159 |
agaggaagaaaaataaccaatagagtgagagtttttggatgaagtttattgctgggttttgttgatgttggatcatgtttattggatgggtttggatgaa |
258 |
Q |
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| T |
45014411 |
agaggaagaaaaataaccaatagagtgagagtttttggatgaagtttattgctgggttttgttgatgttggatcatgtttattggatgggtttggatgaa |
45014312 |
T |
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| Q |
259 |
gatttaagttgggatgatgaagatcaagatgaacctggatg |
299 |
Q |
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| T |
45014311 |
gatttaagttgggatgatgaagatcaagatgaacctggatg |
45014271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 354 - 502
Target Start/End: Complemental strand, 45014216 - 45014068
Alignment:
| Q |
354 |
cgatagaagaattccagatggaatattgttttttggaaaagaaataaaaatttccaactcatcaatgtaatgcgccatgtcagcttatttctacaagatg |
453 |
Q |
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| T |
45014216 |
cgatagaagaattccagatggaatatttttttttggaaaagaaataaaaatttccaactcatcaatgtaatgcgccatatcagcttatttctacaagatg |
45014117 |
T |
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| Q |
454 |
gactaaagtttgaaatccaaaaaattgaaattacaaggttgaaatctaa |
502 |
Q |
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| T |
45014116 |
gactaaagtttgaaatccaaaaaattgaaatcacaaggttgaaatctaa |
45014068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 48648777 - 48648848
Alignment:
| Q |
217 |
ttgttgatgttggatcatgtttattggatgggtttggatgaagatttaagttgggatgatgaagatcaagat |
288 |
Q |
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| T |
48648777 |
ttgttgatgttggatgatgtttattgaatgagtttggaggaaggtttaagttgaaatgatgaagatcaagat |
48648848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 283
Target Start/End: Original strand, 23506061 - 23506111
Alignment:
| Q |
233 |
atgtttattggatgggtttggatgaagatttaagttgggatgatgaagatc |
283 |
Q |
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| T |
23506061 |
atgtttattgaatgagtttggatgaagattcaagttgggatgatgaagatc |
23506111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 44355072 - 44355121
Alignment:
| Q |
233 |
atgtttattggatgggtttggatgaagatttaagttgggatgatgaagat |
282 |
Q |
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| T |
44355072 |
atgtttattgaatgaatttggatgaagatttaagttgggatgatgaagat |
44355121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 233 - 282
Target Start/End: Original strand, 2752719 - 2752768
Alignment:
| Q |
233 |
atgtttattggatgggtttggatgaagatttaagttgggatgatgaagat |
282 |
Q |
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| T |
2752719 |
atgtttattgaatgaatttggatgaagatttaatttgggatgatgaagat |
2752768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 52094889 - 52094839
Alignment:
| Q |
233 |
atgtttattggatgggtttggatgaagatttaagttgggatgatgaagatc |
283 |
Q |
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| T |
52094889 |
atgtttattgaataagtttggatgaagatttaagttgggatgatgaagatc |
52094839 |
T |
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