View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13547_low_9 (Length: 500)
Name: NF13547_low_9
Description: NF13547
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13547_low_9 |
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| [»] scaffold0103 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 13486218 - 13485944
Alignment:
| Q |
18 |
aaattaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaaatggatactttctatttactatatctaaag |
117 |
Q |
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| T |
13486218 |
aaattaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaaatggatactttctatttactatatctaaag |
13486119 |
T |
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| Q |
118 |
atgcacgagaaataaggaaaatcattgccattttgaaaactacggaaaatgtaagttct----atgcttcatccgtaccggtcaatgttcccacaaacca |
213 |
Q |
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| T |
13486118 |
atgcacaagaaatatggaaaatcattgccattttgaaaaccactgaaaatgtaagttctcttgatgcttcatccgtaccggccaatgttcccacaaacca |
13486019 |
T |
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| Q |
214 |
ttttgattatgtggatnnnnnnnttatgatgttactgaaacttcaattattgctccagttattgcatgttgaacc |
288 |
Q |
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| T |
13486018 |
ttttgattatgtggataaaaaaattatgatgttactgaaacttcaattattgctccagttattgcatgttgaacc |
13485944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 282 - 404
Target Start/End: Complemental strand, 13485920 - 13485798
Alignment:
| Q |
282 |
ttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaaccatc |
381 |
Q |
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| T |
13485920 |
ttgaacctaatattgatcttgtttttaaaacctctgtcaaacaatgtgttgagtttatgagtcaagtagatcttatctctaataaggttgttaaaccatc |
13485821 |
T |
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| Q |
382 |
tagtacacttgatatttttgttg |
404 |
Q |
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| T |
13485820 |
tagtacacttgatatttttgttg |
13485798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 485
Target Start/End: Complemental strand, 13485746 - 13485687
Alignment:
| Q |
424 |
tcttgtttctgaaacatcaactgagaccaaataaatcaacaaaagaaaccgcccctaatgat |
485 |
Q |
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| T |
13485746 |
tcttgtttctgaaacatcaactga--ccaaataaatcaacaaaagaaaccgccgctaatgat |
13485687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 278 - 404
Target Start/End: Original strand, 36266 - 36392
Alignment:
| Q |
278 |
catgttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaac |
377 |
Q |
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| T |
36266 |
catgttgaacttaatgtcgatcttgtgtttgaaactcctgtgaaaccctgtgttgattatacgagtcaagtagatcatgtctctgataaggttgttaaaa |
36365 |
T |
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| Q |
378 |
catctagtacacttgatatttttgttg |
404 |
Q |
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| T |
36366 |
catctagtacacctgatatttttgttg |
36392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 21 - 110
Target Start/End: Original strand, 29695 - 29784
Alignment:
| Q |
21 |
ttaaggggctctttaggtttttgcttgtatgagagtttatagaaattacagtcgtggaagcatgcaaatggatactttctatttactata |
110 |
Q |
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||||||||||| |||||| ||| |||||||||| ||||||| ||||||||| |||||||| |||||| ||||||| | ||||||||| |
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| T |
29695 |
ttaaggggctcgttaggtatttatttgtatgagaatttatagcaattacagttgtggaagcgtgcaaacaaatactttttctttactata |
29784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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