View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13548_high_3 (Length: 446)
Name: NF13548_high_3
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13548_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 19846198 - 19845771
Alignment:
| Q |
1 |
agaaaacgaacttctacgaatcatcaagaaaattgaaaaacagattttatataatagaacaaaccaaaacagaacagtagaattatatgataaaaaacca |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
19846198 |
agaaaatgaacttctacgaatcatcaagaaaattgaaaaacagattttatataattgatcaaaccaaaacagaacagtagaattatatgataaaaaacca |
19846099 |
T |
|
| Q |
101 |
agaccggtacctgcttctccataagcatagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacc |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19846098 |
agaccggtacctgcttctccataagcgtagtgacagtcatccccaatgggacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacc |
19845999 |
T |
|
| Q |
201 |
tatttccttccaaattattagaaccatctccgatacttccaatgcttaatgcacaggcctctcttgacttccaagaatcgtccctaagcctatgaagaaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
19845998 |
tatttccttccaaattattagaaccatctccgatacttccaatgcttaatgcacaggcctctcttgatttccaagaatcttccctaagcctatgaagaaa |
19845899 |
T |
|
| Q |
301 |
aatacacgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatccagaaactgcatc |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19845898 |
aatacatgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatccagaaactgcatc |
19845799 |
T |
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| Q |
401 |
cattcctcattgcgaggaccagctagat |
428 |
Q |
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| T |
19845798 |
cattcctcattgcgaggaccagctagat |
19845771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 157 - 426
Target Start/End: Original strand, 22691745 - 22692020
Alignment:
| Q |
157 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaa------ccatctccgatacttccaatgcttaat |
250 |
Q |
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| T |
22691745 |
cttaatcttccagtaagtgccccttgctggcttgttcacagacctattgccttccaaactattagaattggaaccatctccgatacttccaatgcttaat |
22691844 |
T |
|
| Q |
251 |
gcacaggcctctcttgacttccaagaatcgtccctaagcctatgaagaaaaatacacgtatcaccataaggacattcctcaccattgtagtatttcttgc |
350 |
Q |
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| T |
22691845 |
gcacaggcctctcttgatttccaagaatcatccctaagcctatgaagaaaactacacttatcatcataaggacattctttaccattgtagtatttcttgc |
22691944 |
T |
|
| Q |
351 |
atagccccatcttgtgaatgattttctcatcatcatccagaaactgcatccattcctcattgcgaggaccagctag |
426 |
Q |
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| T |
22691945 |
atagccccatcttgtgaatgattttttgatcatcatccagaaactgcatccattcctcgttgcgagcgccagctag |
22692020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 22691597 - 22691698
Alignment:
| Q |
1 |
agaaaacgaacttctacgaatcatcaagaaaattgaaaaacagattttatataatagaa-caaaccaaaacagaacagtagaattatatgataaaaaacc |
99 |
Q |
| |
|
|||||| ||||||| || |||||| ||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||| |
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| T |
22691597 |
agaaaatgaacttccacacatcatcgagaaaattgaaaaacagattttatataatttaaacaaaccaaaacaaaacagtagaattatatgataaaaaacc |
22691696 |
T |
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| Q |
100 |
aa |
101 |
Q |
| |
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|| |
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|
| T |
22691697 |
aa |
22691698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 46899051 - 46898955
Alignment:
| Q |
292 |
atgaagaaaaatacacgtatcaccataaggacattcctcaccattgtagtatttcttgcatagccccatcttgtgaatgattttctcatcatcatcc |
388 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||| |||| || ||||| || ||| |||||||||||||||||| | ||| |||||| |
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| T |
46899051 |
atgaagaaagctacacttatcaccataaggacattcctcaccaatgtaatacttcttacacagcttcatcttgtgaatgattttttgatcttcatcc |
46898955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 150 - 227
Target Start/End: Complemental strand, 46899223 - 46899146
Alignment:
| Q |
150 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattagaaccat |
227 |
Q |
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||||||||||| ||||||| |||| | |||||||||||||||||||| |||| | ||||||||||| |||||||||| |
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| T |
46899223 |
gacacagcttagtcttccaataagcactccttgctggcttgttcacagccctaatgccttccaaattgttagaaccat |
46899146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 221
Target Start/End: Complemental strand, 46890619 - 46890548
Alignment:
| Q |
150 |
gacacagcttaatcttccagtaagtgccccttgctggcttgttcacagacctatttccttccaaattattag |
221 |
Q |
| |
|
||||||||||| |||||| ||||||| ||||||| ||||||||| || ||| | |||||||||||||||| |
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| T |
46890619 |
gacacagcttagtcttccgataagtgctccttgcttgcttgttcaaagccctgctgccttccaaattattag |
46890548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 46864077 - 46864037
Alignment:
| Q |
162 |
tcttccagtaagtgccccttgctggcttgttcacagaccta |
202 |
Q |
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||||||| ||||||||||| |||||||||||||||| |||| |
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| T |
46864077 |
tcttccaataagtgcccctagctggcttgttcacagcccta |
46864037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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