View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13548_high_5 (Length: 390)
Name: NF13548_high_5
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13548_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 374
Target Start/End: Complemental strand, 42677514 - 42677160
Alignment:
| Q |
20 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcataatagaatcggtacaaacacttaaaaaacaaac |
119 |
Q |
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| T |
42677514 |
ttagacaaagctgtatgaattaacctccccttacaatatttttcaattgatggctagcgtggttcacaatagaatcggtacaaacacttaaaaaacaaac |
42677415 |
T |
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| Q |
120 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaattttgctacct |
219 |
Q |
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| T |
42677414 |
atggcgtgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcaaaaagcaaataattgtgcatagtatcggcaacaattttgctacct |
42677315 |
T |
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| Q |
220 |
caggattcaaattctacgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagcttccgccatct |
319 |
Q |
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| T |
42677314 |
caggattcaaattctatgaaccaaaaatgtcttgattttctggtggaaattctcaatctcttgatggttccaaattgtccaaaataagctttcgccatct |
42677215 |
T |
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| Q |
320 |
ccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaagtatt |
374 |
Q |
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| T |
42677214 |
ccatctcttagaagccatgtggaatcaaaccaatatacaaaacatgggaagtatt |
42677160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 168 - 259
Target Start/End: Complemental strand, 52835123 - 52835029
Alignment:
| Q |
168 |
gtgttcacaaagcaaataattgtgcatagtatcggcaacaa-ttttgctacctcag--gattcaaattctacgaaccaaaaatgtcttgattttc |
259 |
Q |
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| T |
52835123 |
gtgttcaaagagcaaataattgtgcatagtatcagcaacaatttttgctacctcaggagattcaaattctatgaagccaaaatgtcttgattttc |
52835029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 309
Target Start/End: Complemental strand, 52835009 - 52834967
Alignment:
| Q |
267 |
aattctcaatctcttgatggttccaaattgtccaaaataagct |
309 |
Q |
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| T |
52835009 |
aattctcaatctcttgacggtaccgaattgtccaaaataagct |
52834967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 48968805 - 48968887
Alignment:
| Q |
126 |
tgaacatgttctgaaggtaccacgaaaacatgtagtatatatgtgttcacaaagcaaataattgtgcatagtatcggcaacaatttt |
212 |
Q |
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| T |
48968805 |
tgaacatgttctgaaggtaccacaaaaacctgtagtag----gtgttcaaaaagcaaataattgtgcatagtatcagcaacaatttt |
48968887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 48969535 - 48969581
Alignment:
| Q |
263 |
tggaaattctcaatctcttgatggttccaaattgtccaaaataagct |
309 |
Q |
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| T |
48969535 |
tggaaattctcaatctcttgatggttccaaattgtccaaaataagct |
48969581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 48968994 - 48969030
Alignment:
| Q |
223 |
gattcaaattctacgaaccaaaaatgtcttgattttc |
259 |
Q |
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| T |
48968994 |
gattcaaattctatgaacccaaaatgtcttgattttc |
48969030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 48969712 - 48969768
Alignment:
| Q |
314 |
ccatctccatctctttgaagccatgtggaatcaacccaatatacaaaacatgggaag |
370 |
Q |
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| T |
48969712 |
ccatctccttctcatagaagccatgtggaatccgaccaatatacaaaacaggggaag |
48969768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 40900464 - 40900512
Alignment:
| Q |
31 |
tgtatgaattaacctccccttacaatatttttcaattgatggctagcgt |
79 |
Q |
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| T |
40900464 |
tgtatgaatgaacctccctttgcaatatttcccaattgatggctagcgt |
40900512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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