View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13548_low_1 (Length: 1181)

Name: NF13548_low_1
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13548_low_1
NF13548_low_1
[»] chr7 (20 HSPs)
chr7 (19-414)||(3703867-3704264)
chr7 (639-756)||(3651452-3651569)
chr7 (19-250)||(3696490-3696729)
chr7 (460-580)||(3703699-3703823)
chr7 (460-583)||(3679616-3679738)
chr7 (794-863)||(3680666-3680735)
chr7 (650-708)||(3702975-3703033)
chr7 (650-705)||(3705909-3705964)
chr7 (650-708)||(3694967-3695024)
chr7 (306-368)||(3695351-3695413)
chr7 (582-639)||(3653830-3653887)
chr7 (650-708)||(3685518-3685578)
chr7 (650-707)||(3693200-3693257)
chr7 (584-635)||(3651121-3651172)
chr7 (592-639)||(3675306-3675353)
chr7 (584-635)||(3706365-3706416)
chr7 (710-763)||(3700503-3700556)
chr7 (794-863)||(3708000-3708071)
chr7 (460-516)||(3675873-3675933)
chr7 (379-413)||(3675975-3676009)
[»] chr2 (2 HSPs)
chr2 (1078-1128)||(17432375-17432425)
chr2 (1129-1163)||(17432316-17432350)
[»] chr6 (1 HSPs)
chr6 (18-78)||(34940912-34940973)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 414
Target Start/End: Complemental strand, 3704264 - 3703867
Alignment:
Q  19 gttgtgatcttatgttttacaattttgctata-tctttcgatctgatgcaatatttcgattttgactacattcattagcatatttatggttatgatttgg 117  Q
    ||||||||||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||      
T  3704264 gttgtgatcttatgttttacaatcttgctatcctctttcaatctgatgcaatatttcgattttgactaccttgattagcatatttatggttatgatttaa 3704165  T
Q  118 ctattaagtttctaaagctttggtgtttgttaagtacttaacatcaaaggattttgttttg---tattatatgcaatgatgccta-ataaaggcatgtat 213  Q
    |||||| |||||| |||||| ||||||||| || ||||||||||| ||||||||||||| |   ||||||||| ||||||||||| |||||||||||||     
T  3704164 ctattatgtttctcaagcttcggtgtttgtgaattacttaacatctaaggattttgtttcgtcttattatatgtaatgatgcctatataaaggcatgtag 3704065  T
Q  214 cagacattagaaattgggtaaagggtgggtttattttagcttaaaaaagattttgggctnnnnnnnntacagggataannnnnnnnagagattttgcaac 313  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||        |||| |||| |        ||||||||||||||    
T  3704064 cagacattagaaattgggt-aagggtgcgtttattttagcttaaaaaagattttgggct-aaaaaaatacatggat-acttttttaagagattttgcaac 3703968  T
Q  314 tagaacctatagaaattttgaagtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaactcaaacttgaacattctacttat 413  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||    
T  3703967 tagaacttatagaaattttgaagtggacttatatattgactatgagttttttaacaaataacttgtaaaagttaaattcaaactaggacattctacttat 3703868  T

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Target: chr7; HSP #2
Raw Score: 110; E-Value: 8e-55
Query Start/End: Original strand, 639 - 756
Target Start/End: Original strand, 3651452 - 3651569
Alignment:
Q  639 cttctgctcgaaataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 738  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651452 cttcggctcgaaataagcagaatttgggacattattaaaagttacataaactgttgctacaattaatcattagatgtcttccaaactggggatcacctag 3651551  T
Q  739 ggttgaaagatggctctg 756  Q
    ||||||||||||||||||    
T  3651552 ggttgaaagatggctctg 3651569  T

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Target: chr7; HSP #3
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 3696729 - 3696490
Alignment:
Q  19 gttgtgatcttatgttttacaattttgctata-tctttcgatctgatgcaatatttcgattttgactacattcattagcatatttatggttatgatttgg 117  Q
    |||||||||||||||||||| || |||||||  ||||||||||| || |||||| || ||| ||||||| || |||||| ||||||| ||||||||||||    
T  3696729 gttgtgatcttatgttttacgatcttgctatcctctttcgatctaattcaatatctctattctgactaccttgattagcctatttatagttatgatttgg 3696630  T
Q  118 ctattaagtttctaaagctttggtgtttgttaagtacttaacatcaaaggattttgttt---tgtattatatgcaatgatgccta-ataaaggc----at 209  Q
    |||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||     ||||||||| ||||||||||| ||||||||    ||    
T  3696629 ctattaagtttctaaagctttggtgtttgtgaattacttaacatctaa-gattttgtttcaccttattatatgtaatgatgcctatataaaggcacatat 3696531  T
Q  210 gtatcagacattagaaattgggtaaagggtgggtttatttt 250  Q
      ||||||||||| |||||||||||| ||||||||| ||||    
T  3696530 caatcagacattaaaaattgggtaaatggtgggtttttttt 3696490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 3703823 - 3703699
Alignment:
Q  460 ttcattctgctatctgttgtag-catgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttg---ttggct 555  Q
    |||||||||||||||||| ||  |||| ||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||| |||   ||||||    
T  3703823 ttcattctgctatctgttataaacatgatttttggcataaagcttataacaaaattaccgtttacttaaattatctccttcaatccaattgttattggct 3703724  T
Q  556 caagtttaatatgattcgactattg 580  Q
    |||||||||||||||||||||||||    
T  3703723 caagtttaatatgattcgactattg 3703699  T

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Target: chr7; HSP #5
Raw Score: 72; E-Value: 4e-32
Query Start/End: Original strand, 460 - 583
Target Start/End: Complemental strand, 3679738 - 3679616
Alignment:
Q  460 ttcattctgctatctgttgtagcatgctttttggcataaagcttatatgaaaattatcgtttacttaaattatctccttcaatccatttgttggctcaag 559  Q
    |||||||||||||||||| || |||| || ||||||||||||| |||  |||||||  |||||||||||||||||||||||||||| |||||||||||||    
T  3679738 ttcattctgctatctgttataacatgattcttggcataaagct-ataacaaaattactgtttacttaaattatctccttcaatccaattgttggctcaag 3679640  T
Q  560 tttaatatgattcgactattgcag 583  Q
    |||||||||||| ||||| |||||    
T  3679639 tttaatatgatttgactagtgcag 3679616  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 794 - 863
Target Start/End: Original strand, 3680666 - 3680735
Alignment:
Q  794 taattatctaaacaacctctaacttcacccttctgcttattcattagtttcccttctaccaatcttttaa 863  Q
    |||||||||||||||||||||||||| || | ||||||||| ||||||||||||||||||||||||||||    
T  3680666 taattatctaaacaacctctaacttccccatcctgcttattgattagtttcccttctaccaatcttttaa 3680735  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 650 - 708
Target Start/End: Complemental strand, 3703033 - 3702975
Alignment:
Q  650 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 708  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  3703033 aataaacagaatttgagacattattaaaagttacataaactgttgccacaattaatcat 3702975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 8e-18
Query Start/End: Original strand, 650 - 705
Target Start/End: Complemental strand, 3705964 - 3705909
Alignment:
Q  650 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaat 705  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  3705964 aataaacagaagttgagacattattaaaagttacataaactgttgctacaattaat 3705909  T

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Target: chr7; HSP #9
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 650 - 708
Target Start/End: Complemental strand, 3695024 - 3694967
Alignment:
Q  650 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatcat 708  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  3695024 aataaacaga-tttgagacattattaaaagttacataaactgttgctacaattaatcat 3694967  T

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Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 3695413 - 3695351
Alignment:
Q  306 tttgcaactagaacctatagaaattttgaagtggacttatatattgactatgagttttttaac 368  Q
    |||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||    
T  3695413 tttgcaactagaacttatagatattttgaaatggacttatatattaactatgagttttttaac 3695351  T

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Target: chr7; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 582 - 639
Target Start/End: Original strand, 3653830 - 3653887
Alignment:
Q  582 aggagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtactattac 639  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||    
T  3653830 aggagtgtgttatagttgatggaagcttgtttttgtaacttagaccatgtactattac 3653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 650 - 708
Target Start/End: Complemental strand, 3685578 - 3685518
Alignment:
Q  650 aataaacagaatttggga--cattattaaaagttacataaactgttgctacaattaatcat 708  Q
    ||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||    
T  3685578 aataaacagaatttgagagacattattaaaagttacataaactgttgctacaattaatcat 3685518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 650 - 707
Target Start/End: Complemental strand, 3693257 - 3693200
Alignment:
Q  650 aataaacagaatttgggacattattaaaagttacataaactgttgctacaattaatca 707  Q
    |||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||    
T  3693257 aataaacataatttaagacattattaaaagttacataaactgttgctacaattaatca 3693200  T

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Target: chr7; HSP #14
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 584 - 635
Target Start/End: Original strand, 3651121 - 3651172
Alignment:
Q  584 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 635  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3651121 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3651172  T

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Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 592 - 639
Target Start/End: Complemental strand, 3675353 - 3675306
Alignment:
Q  592 tatagttgaaggaggcttgtttttgtaacttagactatgtactattac 639  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3675353 tatagttgaaggaggcttgtttttctaacttagactatgtactattac 3675306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 584 - 635
Target Start/End: Complemental strand, 3706416 - 3706365
Alignment:
Q  584 gagtgtgttatagttgaaggaggcttgtttttgtaacttagactatgtacta 635  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  3706416 gagtgtgttatagtcgatggaggcttgtttttgtaacttagactatgtacta 3706365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 710 - 763
Target Start/End: Complemental strand, 3700556 - 3700503
Alignment:
Q  710 agatgtcttccaaactggggatcacctagggttgaaagatggctctgaaatgag 763  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||| |||||    
T  3700556 agatgtcttccaaactggggatcacctagggttaaaagatgactctgatatgag 3700503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 794 - 863
Target Start/End: Original strand, 3708000 - 3708071
Alignment:
Q  794 taattatctaaacaacctctaacttcacccttctgcttat--tcattagtttcccttctaccaatcttttaa 863  Q
    |||||||| |||||||||| |||||| ||||||| | |||  | ||||||||||||||||||||||||||||    
T  3708000 taattatcaaaacaacctccaacttcccccttctacctatattgattagtttcccttctaccaatcttttaa 3708071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 460 - 516
Target Start/End: Complemental strand, 3675933 - 3675873
Alignment:
Q  460 ttcattctgctatctgttgtagcat----gctttttggcataaagcttatatgaaaattat 516  Q
    |||| ||||||||||||||||||||    ||||||||||||||||||||||| ||||||||    
T  3675933 ttcactctgctatctgttgtagcatacatgctttttggcataaagcttatatcaaaattat 3675873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 3676009 - 3675975
Alignment:
Q  379 taaaagttaaactcaaacttgaacattctacttat 413  Q
    ||||||||||||||||||||| |||||||||||||    
T  3676009 taaaagttaaactcaaacttggacattctacttat 3675975  T

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Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 1078 - 1128
Target Start/End: Complemental strand, 17432425 - 17432375
Alignment:
Q  1078 agagagacaaaaatgcaataacatttcaagaaattgcaacgttgcttgcca 1128  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17432425 agagagacaaaaatgcaataacatttcaagaaattgcaaccttgcttgcca 17432375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1129 - 1163
Target Start/End: Complemental strand, 17432350 - 17432316
Alignment:
Q  1129 tttccttacactacatttatattctacctcattcc 1163  Q
    |||||||||||||||||||||||||||||||||||    
T  17432350 tttccttacactacatttatattctacctcattcc 17432316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 34940973 - 34940912
Alignment:
Q  18 agttgtgatcttatgttttacaattttgctatatc-tttcgatctgatgcaatatttcgatt 78  Q
    ||||| |||||||||||||||||| |||| ||  | |||||||||||||||| |||||||||    
T  34940973 agttgcgatcttatgttttacaatcttgccatcccctttcgatctgatgcaagatttcgatt 34940912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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