View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13548_low_3 (Length: 965)
Name: NF13548_low_3
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13548_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 601; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 601; E-Value: 0
Query Start/End: Original strand, 19 - 738
Target Start/End: Complemental strand, 5052186 - 5051458
Alignment:
| Q |
19 |
actattgtcttcaatgttcactgaatattccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatactttgaacctcactatctttaag |
118 |
Q |
| |
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||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| || |
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| T |
5052186 |
actattgtcttaaatgttcactgaat-ttccaatccaaactcacattcctgtaaacgccttcttggcaatgtcaatacattgaacctcactgtctttgag |
5052088 |
T |
|
| Q |
119 |
agtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtga |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052087 |
agtggcctatgaacatggcagtaagtaaagggaatgagggggttaaagtacacaactaatagatatcaaatgtcatgtcccctcaatcttctcctcgtga |
5051988 |
T |
|
| Q |
219 |
ttggggccgggatcaatcaagtcagcaataatacataatttaacagttgggcaaagggctatcataattgttcaactaagtatcaaaatccattatccaa |
318 |
Q |
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| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
5051987 |
tcggggccgggatcaatcaagtcagcaacaatacataatttgacagttgggcaaagggctatcataattgttcaactaagtatcagaatcaattatccaa |
5051888 |
T |
|
| Q |
319 |
ttaaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagata |
418 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051887 |
tttaaatttggtaggtaatagctcgtgaacatacaatctattagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagata |
5051788 |
T |
|
| Q |
419 |
tggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttct------taatctcacagctccaattcaatgaacgatcagtttt |
512 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | |
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| T |
5051787 |
tggagtcgtgtccatacaagacaggagtgagatgcaaatccatcgcaaagcgcttcttagcaataatctcacagctccaattcaatgaacggccagttct |
5051688 |
T |
|
| Q |
513 |
tcatcaccaatatactttggtccaacaaatga---aagaagaaaaccagaaaagtagcacttcaattttatctcaaagcataaactcctcgtatcgttgt |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | |
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|
| T |
5051687 |
tcatcaccaatatactttggtccaacaaatgaaagaagaagaaaaccagaaaagtagcacttcaattttatctcaaagcgtaaactcctcgtatggttct |
5051588 |
T |
|
| Q |
610 |
catccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat-aaatca |
708 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||| |
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| T |
5051587 |
catccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccctaaactcgacaatataacaagataaaatca |
5051488 |
T |
|
| Q |
709 |
tccttatattcgagaattgttggattttca |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
5051487 |
tccttatattcgagaattgttggattttca |
5051458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 794 - 953
Target Start/End: Complemental strand, 5051458 - 5051299
Alignment:
| Q |
794 |
acatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcgaaggcttcgtttgcgaac |
893 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5051458 |
acatcctcgcgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgaccgtgtactcgaaggcttcgtttgcgaac |
5051359 |
T |
|
| Q |
894 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
953 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5051358 |
cttattattttatagcattgatggaaacacaaaaaagtatctttcaaccatcacaggttc |
5051299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 291 - 953
Target Start/End: Original strand, 51273452 - 51274120
Alignment:
| Q |
291 |
caactaagtatcaaaatccattatccaattaaaatttggtaggtaatagctcgtgaacata-caatctattagcaatatatactacaatcaacatggaga |
389 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||||| | ||||||| |||||||| |||| | ||||||||||||||| |||||||||||||| |
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| T |
51273452 |
caaccaagtatcagaatcgattatccaattaaaatttggtagcttatagctcttgaacataacaatattctagcaatatatactaaaatcaacatggaga |
51273551 |
T |
|
| Q |
390 |
acttatcagatgatatatggatggagatatggagtcgtgtc-catacaagacaggagtgagatgcaaatccatcgcaaagcgcttctta------atctc |
482 |
Q |
| |
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| |||||||||||| ||| ||| ||||||||||||||||| | |||||||||| |||||| |||||||||||| ||||||| |||||| ||||| |
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| T |
51273552 |
atttatcagatgatttattgatagagatatggagtcgtgtttcgtacaagacagcagtgagttgcaaatccatctcaaagcgtttcttagctttaatctc |
51273651 |
T |
|
| Q |
483 |
acagctccaattcaatgaacgatcagtttttcatcaccaatatactttggtccaacaaatgaaagaa---gaaaaccagaaaag-tagcacttcaatttt |
578 |
Q |
| |
|
|||||||||||||| |||||||||| || |||||||||| ||||||| ||||||||||||||||| ||||||||||||| | ||||||||||||| |
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|
| T |
51273652 |
acagctccaattcattgaacgatcaattcttcatcacca---tactttgctccaacaaatgaaagaacaagaaaaccagaaaaaatggcacttcaatttt |
51273748 |
T |
|
| Q |
579 |
atctcaaagcataaactcctcgtatcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgacc |
678 |
Q |
| |
|
|||||||||| |||||| ||| | ||||| ||| | |||||| ||||||||||||||| ||| |||||||| | | ||||||| ||| |||||||||| | |
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| T |
51273749 |
atctcaaagcgtaaacttctcatttcgttctcaccaaatctcaatctttctactcctgaaaatcaaatttcattgtgttttcttggccgaaaattcgatc |
51273848 |
T |
|
| Q |
679 |
ttaaactcagcaatataacaagataaat-catc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtag |
776 |
Q |
| |
|
|||||| ||||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||||| |
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|
| T |
51273849 |
ctaaacttgacaatataacaagaaaaaaacatgtcttatattcgagaattgtcggattttcaaatggcttgtttctctgcaagaaaaccacacgtggtag |
51273948 |
T |
|
| Q |
777 |
agtctaccatgtatgcaacatcctcacgaaagattggatcaaacttccactccctccatagctggaaaccggtcagaaataaacgtgactgtgtactcga |
876 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || ||||||||| |||||||||||| ||||||| || |
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| T |
51273949 |
agtctaccatgtatgcaacatcctcacaaaagattggatcaaacttccactccctccaccgccgggaaccggtca-caataaacgtgaccgtgtactaga |
51274047 |
T |
|
| Q |
877 |
aggcttcgtttgcgaaccttattattttatagcattgatggaaacacaaa-aaagtatctttcaaccatcacaggttc |
953 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||| | | || |||||| ||||||||||||||||||||||||||| |
|
|
| T |
51274048 |
aggctttgtttgtgaacctta-----ttatagcatcggagaaagcacaaagaaagtatctttcaaccatcacaggttc |
51274120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 110; Significance: 6e-55; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 603 - 834
Target Start/End: Original strand, 14907802 - 14908035
Alignment:
| Q |
603 |
tcgttgtcatccaatctccatctttctactcctgcaaaccaaatttcctagagttttctgggctgaaaattcgaccttaaactcagcaatataacaagat |
702 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||| ||||||||||| || ||||||||| || |||||||||||| ||||||| ||||||||||||| |
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|
| T |
14907802 |
tcgttctcacccaatctcaatctttctactcctgaaaaccaaatttacttgagttttctttgccgaaaattcgaccctaaactcgacaatataacaagaa |
14907901 |
T |
|
| Q |
703 |
aa-atcatc-cttatattcgagaattgttggattttcaaatggcttgattctctgcaagaaaaccatacatggtagagtctaccatgtatgcaacatcct |
800 |
Q |
| |
|
|| | || ||||||||||||||||||||||| ||| ||||||||| |||| ||||||||||||| || | |||||||||||||||| ||||||||||| |
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|
| T |
14907902 |
aataaaatgtcttatattcgagaattgttggatcttccaatggcttgtttctgtgcaagaaaaccacacgtagtagagtctaccatgtctgcaacatcct |
14908001 |
T |
|
| Q |
801 |
cacgaaagattggatcaaacttccactccctcca |
834 |
Q |
| |
|
||| |||||| |||||||| |||||||||||||| |
|
|
| T |
14908002 |
cacaaaagataggatcaaatttccactccctcca |
14908035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 360 - 477
Target Start/End: Original strand, 14907599 - 14907717
Alignment:
| Q |
360 |
tagcaatatatactacaatcaacatggagaacttatcagatgatatatggatggagatatggagtcgtg-tccatacaagacaggagtgagatgcaaatc |
458 |
Q |
| |
|
|||||||||||||| ||||||||||||||| |||||||||||| ||| ||| |||| ||||| ||||| | ||||||| ||| |||||| | |||||| |
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|
| T |
14907599 |
tagcaatatatacttaaatcaacatggagaatttatcagatgatttattgatagagacatggattcgtgtttcatacaaaacatcagtgagttacaaatc |
14907698 |
T |
|
| Q |
459 |
catcgcaaagcgcttctta |
477 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
14907699 |
catctcaaagcgcatctta |
14907717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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