View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13548_low_4 (Length: 557)
Name: NF13548_low_4
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13548_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 25050393 - 25050171
Alignment:
| Q |
11 |
atcatcaatattgaattgcatgctttacattacattcctgcaacgatgtggactactcgtgaaaatgactgaaccagcttgggggatatatcatatatgt |
110 |
Q |
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| T |
25050393 |
atcatcaatattgaattgcatgctttacattacattcctgcaacgatgtggactactcgtgaaa-tgactgaaccagtttgggggatatatcatatatgt |
25050295 |
T |
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| Q |
111 |
caaactcaatcgagtaaaaccaaatttcaaagtcaataaacatttaattttattcttgaagttgggcatgcaatgtgcaagtctattacnnnnnnnnnng |
210 |
Q |
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| T |
25050294 |
caaactcaatcgagtaaaaccaaatttcaaagtcaattaacatttaattttattcttgaagttgggcatgcaatgtgcaagtctattacttttttctttg |
25050195 |
T |
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| Q |
211 |
gacaaaaacatttcaatcacttta |
234 |
Q |
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| T |
25050194 |
gacaaaaacatttcaatcacttta |
25050171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 254 - 476
Target Start/End: Complemental strand, 25050070 - 25049856
Alignment:
| Q |
254 |
aaatacctttattaactctcacatttcaaagtattttttatagaagccaaaatatattagcaagttatttaagtataagatgtatctgaaatagaaaaat |
353 |
Q |
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|||||| | |||||| | || ||||||||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||| || |
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| T |
25050070 |
aaatacatctattaattatctcatttcaaagttttttttatagaagccaaaatatattagcaagctatttaagtacaagatgtgtctcaaatagaaatat |
25049971 |
T |
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| Q |
354 |
tgcaaatattcataatacaagaggataaaacctccaaaacacaatagaataatcaagatgagttcaaaaggagagcagtaacaaaacaagaaggtttagt |
453 |
Q |
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| T |
25049970 |
tgcaaatattcataatacaaggggataaaacctccaaaacacaatagaactatcaagatgggttcaaaag--gagtagt------acaagaaggtttagt |
25049879 |
T |
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| Q |
454 |
ccaccaaagatgggacacgaaaa |
476 |
Q |
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| T |
25049878 |
ccaccaaagatgggacacgaaaa |
25049856 |
T |
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