View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13548_low_9 (Length: 237)
Name: NF13548_low_9
Description: NF13548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13548_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40932310 - 40932089
Alignment:
| Q |
1 |
tgatcctgtttagaatcatcttcattttcatcatctacnnnnnnnnn-catacaaaacaaagaacacatgaggaatagaaatcaaacaaaattgcacatg |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40932310 |
tgatcctgtttagaatcatcttcattttcatcatctacaaaaaaaaaacatacaaaacaaagaacacatgaggaatagaaatcaaacaaaattgcacatg |
40932211 |
T |
|
| Q |
100 |
catcgaaaatggataaaagtgcaaaataacagcactgctgtgactcattgatcgaaccatgtaagcatcaaatagaagggg--nnnnnnnnctgaaatag |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
40932210 |
catcgaaaatggataaaagtgcaaaataacagcactgctgtgactcattgatcgaaccatgtaagcatcaaatagaaggggaaaaaaaaaactgatatag |
40932111 |
T |
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| Q |
198 |
actataaataaacaattagaat |
219 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
40932110 |
actataaataaacaattagaat |
40932089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 40940288 - 40940181
Alignment:
| Q |
50 |
tacaaaacaaagaacacatgaggaatagaaatcaaacaaaattgcacatgcatcgaaaatggataaaagtgcaaaataacagcactgctgtgactcattg |
149 |
Q |
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|||||||||||||||| ||||| ||||||||| ||||||| ||||||| |||| |||| |||||||| ||||||| ||||| | ||| ||| | |||| |
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| T |
40940288 |
tacaaaacaaagaacatgtgagggatagaaatc-aacaaaagtgcacat-catcaaaaactgataaaagcgcaaaatgacagccccgctatgatttattg |
40940191 |
T |
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| Q |
150 |
atcgaaccat |
159 |
Q |
| |
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|| ||||||| |
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| T |
40940190 |
attgaaccat |
40940181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 40922814 - 40922779
Alignment:
| Q |
50 |
tacaaaacaaagaacacatgaggaatagaaatcaaa |
85 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
40922814 |
tacaaaataaagaacacatgaggaatagaaatcaaa |
40922779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 160
Target Start/End: Complemental strand, 55062152 - 55062040
Alignment:
| Q |
48 |
catacaaaacaaagaacacatgaggaatagaaatcaaacaaaattgcacatgcatcgaaaatggataaaagtgcaaaataacagcactgctgtgactcat |
147 |
Q |
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|||| |||||||| ||| ||||||| ||||| ||||||| |||||||||||||| ||||| |||||||| ||||||| ||||| | ||| ||| | || |
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| T |
55062152 |
cataaaaaacaaacaacgcatgagggatagatatcaaactaaattgcacatgcactgaaaaccgataaaagcgcaaaattacagccccgctatgatttat |
55062053 |
T |
|
| Q |
148 |
tgatcgaaccatg |
160 |
Q |
| |
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||||||||||||| |
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| T |
55062052 |
tgatcgaaccatg |
55062040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 91
Target Start/End: Complemental strand, 55062644 - 55062605
Alignment:
| Q |
52 |
caaaacaaagaacacatgaggaatagaaatcaaacaaaat |
91 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
55062644 |
caaaacaaagaacacatgaggaatagaaatcaaacaaaat |
55062605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 55062228 - 55062191
Alignment:
| Q |
1 |
tgatcctgtttagaatcatcttcattttcatcatctac |
38 |
Q |
| |
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||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
55062228 |
tgatcatgtttagaatcatcttcactttcatcatctac |
55062191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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