View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13549_high_2 (Length: 380)

Name: NF13549_high_2
Description: NF13549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13549_high_2
NF13549_high_2
[»] chr1 (1 HSPs)
chr1 (16-363)||(24273945-24274289)
[»] chr3 (9 HSPs)
chr3 (19-359)||(13417368-13417708)
chr3 (168-359)||(30047642-30047835)
chr3 (19-241)||(28706304-28706524)
chr3 (146-359)||(27367507-27367707)
chr3 (255-359)||(18726266-18726370)
chr3 (270-359)||(28706521-28706610)
chr3 (265-359)||(27338638-27338732)
chr3 (19-78)||(30047515-30047574)
chr3 (146-208)||(18726188-18726250)
[»] chr4 (2 HSPs)
chr4 (106-345)||(53471070-53471311)
chr4 (97-241)||(9008945-9009089)
[»] scaffold0043 (1 HSPs)
scaffold0043 (233-359)||(79390-79518)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 363
Target Start/End: Original strand, 24273945 - 24274289
Alignment:
Q  16 attatatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaag 115  Q
    |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |   ||  ||||||| ||| ||||||    
T  24273945 attatatctttgagtcttctggacaagaaggggtttagttttaaaagtgaaggtggagctatacatatttt-caagggtt--caagtgtgattctgaaag 24274041  T
Q  116 gtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagtt 215  Q
    ||||||||||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24274042 gtgtgaagcagagtactttgtactttttacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagtt 24274141  T
Q  216 gtggcatatgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtga 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  24274142 gtggcatatgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcataagataaaagatcttgggttccgtga 24274241  T
Q  316 acactgtgtttttgggtaactacatcgcaacaaatttcctaaagtaat 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24274242 acactgtgtttttgggtaactacatcgcaacaaatttcctaaagtaat 24274289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 19 - 359
Target Start/End: Complemental strand, 13417708 - 13417368
Alignment:
Q  19 atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaaggtg 118  Q
    |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||   || | || |||  |    | ||||  || |||||||||||||    
T  13417708 atatctctgagtcttttggacaagaaggggtttagtttcaaaagtgaaggtggagagttatacatgtttgcaagggt-tcaaccgtgattttgaaaggtg 13417610  T
Q  119 tgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtg 218  Q
    |||| | | ||||| | ||||||||||||||||||||  |||||| |   ||||||||||||||||| |||||||||||  |||||||||||| ||||||    
T  13417609 tgaaacgatgtactctctactttctacaaggtactacactatctgcttaagttgttgttgcttcctccgagattgaccataaagatatgacgaggttgtg 13417510  T
Q  219 gcatatgaggcttgggcatatgagtgaga-tggg-tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaa 316  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||| ||| ||  | || ||||||||||||||||||    
T  13417509 gcatatgaggcttgggcatatgagtgagagtgggatgcaaattctggctaaagataatcttctttgtgagcaaaatct-aaggatcttgggttctgtgaa 13417411  T
Q  317 cactgtgtttttgggtaactacatcgcaacaaatttcctaaag 359  Q
    ||||||||||||||| ||||||||||||| || ||||| ||||    
T  13417410 cactgtgtttttgggaaactacatcgcaataagtttccaaaag 13417368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 168 - 359
Target Start/End: Original strand, 30047642 - 30047835
Alignment:
Q  168 tgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggct 265  Q
    |||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||  |||  |||||||||| |||    
T  30047642 tgttgttgttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatgaggcttggacatatgagtgagtaggggatgcaaattctagct 30047741  T
Q  266 aaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaaatttcctaaag 359  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||| || || ||||| ||||    
T  30047742 aaagatgatcttatttgtgggcacaaaataaatgatcttgggttctgtgaaaactgtgtttttgggaaactacatcgaaataagtttccaaaag 30047835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 28706304 - 28706524
Alignment:
Q  19 atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaa-ggt 117  Q
    |||| ||||||||||||||||||||||||||||||||| |||  ||||| ||||| ||||||| |||  | |   ||  ||||||| |||  |||| |||    
T  28706304 atatttttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtttg-caagggtt--caagtgtgattcagaaaaggt 28706400  T
Q  118 gtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgt 217  Q
    |||||||  |||||| | ||||||||||||||||| ||  || |||||  || || ||||||||||||  ||||||||||||||||||||||||||||||    
T  28706401 gtgaagcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattgaccaagaagatatgacgaagttgt 28706500  T
Q  218 ggcatatgaggcttgggcatatga 241  Q
    |||||| |||||||| ||||||||    
T  28706501 ggcataagaggcttgcgcatatga 28706524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 146 - 359
Target Start/End: Complemental strand, 27367707 - 27367507
Alignment:
Q  146 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtga 245  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| |   ||       ||||    
T  27367707 aaggtactatgctatctgattctgttgttgttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcatatgagtcagagg-------gtga 27367615  T
Q  246 gatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaa 345  Q
          || ||||| ||| ||||||||||  ||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| | ||||  |||||||    
T  27367614 ------tgaaaattttggataaagatgatcctctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaa 27367521  T
Q  346 caaatttcctaaag 359  Q
    ||| ||||||||||    
T  27367520 caagtttcctaaag 27367507  T

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Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 255 - 359
Target Start/End: Original strand, 18726266 - 18726370
Alignment:
Q  255 aaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaaatttcc 354  Q
    ||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| | ||||  |||||||||| |||||    
T  18726266 aaattttggataaagatgatcttctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaagtttcc 18726365  T
Q  355 taaag 359  Q
    |||||    
T  18726366 taaag 18726370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 270 - 359
Target Start/End: Original strand, 28706521 - 28706610
Alignment:
Q  270 atgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaaatttcctaaag 359  Q
    |||||||||||| |||||| ||||| || ||||||| ||| ||| |||||||||||| |||| |||||||||||||||| ||||| ||||    
T  28706521 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaagtttccaaaag 28706610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 27338732 - 27338638
Alignment:
Q  265 taaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaaatttcctaaag 359  Q
    |||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||| |||  ||||| | ||||  |||||||||| ||||||||||    
T  27338732 taaacatgatcttctttgtgagcacaagataaaggattttgggttctgtgaacattgtaattttgagaaactttatcgcaacaagtttcctaaag 27338638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 30047515 - 30047574
Alignment:
Q  19 atatctttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctata 78  Q
    |||||| |||||||||||||||||||| |||||||||| |||  ||||||||||| ||||    
T  30047515 atatctctgagtcttttggacaagaagaggtttagtttcaaaggtgaaggtggagttata 30047574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 18726188 - 18726250
Alignment:
Q  146 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatga 208  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||| ||||||||||||||    
T  18726188 aaggtactatgctatctgattatgttgttgttgcttcctccgaaattggccaagaagatatga 18726250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 106 - 345
Target Start/End: Complemental strand, 53471311 - 53471070
Alignment:
Q  106 attttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagata 205  Q
    ||||||||||||||||||   |||||| | ||||||||||||||||||||| || |||||  || ||||||||||||||  |||||||||||||||||||    
T  53471311 attttgaaaggtgtgaagaggggtactctgtactttctacaaggtactacgctaactgattatggtgttgttgcttccttcgagattgaccaagaagata 53471212  T
Q  206 tgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatct 303  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||| || |||||| ||| ||||||||||| ||||     
T  53471211 tgacgaaattgtggcatatgaggcttgggcatatgagtgagagggggatgcaaattcttgctaaagataatcttctttatggacacaagataaaggatcc 53471112  T
Q  304 tgggttctgtgaacactgtgtttttgggtaactacatcgcaa 345  Q
    |||||| | |||||||| || ||||||| ||| |||||||||    
T  53471111 tgggttatctgaacactatgcttttgggaaacgacatcgcaa 53471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 97 - 241
Target Start/End: Complemental strand, 9009089 - 9008945
Alignment:
Q  97 tcaagtgtaattttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgacc 196  Q
    |||||||| ||| | ||||||| ||||| ||||||| |||| ||||||||||||| |||  ||||||||  ||||| |||| ||||||  || ||||||     
T  9009089 tcaagtgtgattctaaaaggtgagaagcgaggtactctttaatttctacaaggtattacactatctgattatgttgctgtttcttccttcgatattgact 9008990  T
Q  197 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9008989 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 9008945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 233 - 359
Target Start/End: Original strand, 79390 - 79518
Alignment:
Q  233 ggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgg 330  Q
    ||||||||||| ||| |||  || ||||| ||| ||||| |||| |||||||||||||||||||||| ||| || |||||| |||||| |||| |||||     
T  79390 ggcatatgagtcagagggggatgaaaattttggataaaggtgatcttctttgtgggcacaagataaaggattttaggttctctgaacattgtgattttga 79489  T
Q  331 gtaactacatcgcaacaaatttcctaaag 359  Q
    | ||||  |||||||||| ||||||||||    
T  79490 gaaactttatcgcaacaagtttcctaaag 79518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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