View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13549_high_4 (Length: 229)
Name: NF13549_high_4
Description: NF13549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13549_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 6191482 - 6191286
Alignment:
| Q |
11 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
110 |
Q |
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| T |
6191482 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgtatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
6191383 |
T |
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| Q |
111 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacaccactg |
210 |
Q |
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| T |
6191382 |
gaaaacaactatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatataca---aggacaggttattgttcccgacaccactg |
6191286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 183
Target Start/End: Complemental strand, 6184482 - 6184320
Alignment:
| Q |
18 |
ggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagtgaaaaca |
117 |
Q |
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| T |
6184482 |
ggaaatgaaggaagaccaattgaatctgaagctgcattgcatttatctccagtgtcaactgttgaa---aaaagttctgataacaagtcaagtgtaaaca |
6184386 |
T |
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| Q |
118 |
actatgatgggaaagacaattttgatgagaccaagcaatcagaaggaaaaccaaatatacaaggag |
183 |
Q |
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| T |
6184385 |
actacgataggccagacaattgtgatgagaccaagaatccagaagaaaaaccaaacatacaaggag |
6184320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 37454117 - 37454316
Alignment:
| Q |
11 |
aagcaaaggaaatgaaggaagaccaactgaatctgaagctggattgcatctgccggtaatgtcagcgtttgaaggcaacacttctgataacaagtcaagt |
110 |
Q |
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||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| | |||| || | ||||||||||||| |||| |
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| T |
37454117 |
aagcaaaggaattgaaggaagaccaacagaatctgaagctggattgcatcttccggtaatgtcagcggtcgaagaaaatgcatctgataacaagttaagt |
37454216 |
T |
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| Q |
111 |
gaaaacaactatgatgggaaagacaattt---tgatgagaccaagcaatcagaaggaaaaccaaatatacaaggaggacaggttattgttcccgacacca |
207 |
Q |
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|||||||| |||||| || |||||||| | ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
37454217 |
gaaaacaattatgattggcaagacaatattgatgatgagaccaagcaatcaaaaggaaaagcaaatatacaaggaggacaagttattgttcctgacacca |
37454316 |
T |
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