View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13549_low_1 (Length: 578)
Name: NF13549_low_1
Description: NF13549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13549_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 74 - 563
Target Start/End: Complemental strand, 1112847 - 1112335
Alignment:
| Q |
74 |
gtctcccaattttgctgcagtgacaattcacacgttcgcgcagtaaacagatcggtaactgttggatcgaaatcgaaaggtgcaaaacgtaagcaaattt |
173 |
Q |
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| T |
1112847 |
gtctcccaattttgctgcaa----aattcacatgttcgcgcagtaaacagattggtaactgttggatcgagatcgaaaggtgcaaaacgtaagcaaattt |
1112752 |
T |
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| Q |
174 |
tga----------attctaaaacatcgatcttgaaatttggaccttccaatcttgatttaacgatactaatacatacgctaaccgtgtgaatgcgtggaa |
263 |
Q |
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| T |
1112751 |
tgatattttttgaattctaaaacatcgatcatgaaatttggaccttccaatcttgatttaacgatactaatacatacgctaaccgtgtgaacgcgtggaa |
1112652 |
T |
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| Q |
264 |
tttgtgactgcagtaaatccaaatctgactattttggtagcaaa------------------aagttgtacctacaagaaacaaatgtgaaaagtttttc |
345 |
Q |
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| T |
1112651 |
tttgtgactgcagtaaatccaaatctgactattttggtagcaaatatcaacactcagaattaaagttgttcctactagaaacaaatgtgaaaagtttttc |
1112552 |
T |
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| Q |
346 |
caaatctgactataccatacctatctttttccaactttttccattatacttttttacagcagcaatcaaaagtttatcctgtaaataagaaaacaagaaa |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1112551 |
caaatctgactataccatacctatctttttccaactttt-ccattatacttttttacagcatcaatcaaaagtttatcctgtaaataagaaaacaagaaa |
1112453 |
T |
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| Q |
446 |
agtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttggttgaatagtttcttggtaaacaagtaactttaagaattgaatg |
545 |
Q |
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| T |
1112452 |
agtgagattcatgactctgtatagataatgatgttattggcaagaaattctctttggttgaatagtttcttggtaaacaagtaactttaagaattgaatg |
1112353 |
T |
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| Q |
546 |
gtttgttgatccttacct |
563 |
Q |
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| T |
1112352 |
gtttgttgatccttacct |
1112335 |
T |
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