View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1354_high_1 (Length: 550)
Name: NF1354_high_1
Description: NF1354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1354_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Complemental strand, 20065747 - 20065243
Alignment:
| Q |
18 |
ctaaaaattagtaggtttatccaaactgatctaatgatatcacgaatgattattttactttacttaaatcggagtaccttatatagtttgagttttaggt |
117 |
Q |
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|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| || ||| |||||||||||||| |
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| T |
20065747 |
ctaaaaattagtgagtttactcaaactgacctaatgatatcacgaatgattattttacttcacttaaatcagagtactttgtatgatttgagttttaggt |
20065648 |
T |
|
| Q |
118 |
ttggacaaattcaacctaaaccgatccatgtatacccctagttgagttatactaatccaactttagaaatttctatatatacatacgaagcacacccatt |
217 |
Q |
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||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
20065647 |
ttggacaaacccaatctaaaccgatccacgtatacccctagttgagttatactaatccaactttaaaaatttctatatatacatacgaagcacacccatt |
20065548 |
T |
|
| Q |
218 |
ccacctcacatctcaattttctaaacatctttcatcatggaaaatcacaagaaatccccgtcccttagtcttgaaaccaaggacattgtgatcgttaaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
20065547 |
ccacctcacatctcaattttctaaacatctttcatcatggaaaatcacaagaaatccccgtcccttagtcttgaaaccaaggacattgtgattgttaaac |
20065448 |
T |
|
| Q |
318 |
cctccaagcccacaccttctgaaattctttcactttccaccattgacaatgatcctaacctcaacattctttgccaaacaatttatgtctacaaaccaaa |
417 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
20065447 |
cctccatgcccacaccttctgaaattctttcactttccaccattgacaatgatcctaacatcaacattctttgccaaacaatttatgtctacaaaccaaa |
20065348 |
T |
|
| Q |
418 |
tcttgatttcccaaatgaccaaaaagaccctgcttgtgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcaggaaagataaca |
517 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20065347 |
tcttgatttcccaaatgacaaaaaagaccctgcttgtgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcaggaaagataaca |
20065248 |
T |
|
| Q |
518 |
acact |
522 |
Q |
| |
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||||| |
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| T |
20065247 |
acact |
20065243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 336 - 521
Target Start/End: Complemental strand, 20051579 - 20051400
Alignment:
| Q |
336 |
ctgaaattctttcactttccaccattgacaatgatcctaacctcaacattctttgccaaacaatttatgtctacaaaccaaatcttgatttcccaaatga |
435 |
Q |
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|||||||||||||||||||||| ||||| ||||||| |||||||||| | |||||||||||||| |||||| | |||||||| ||||||||||| |
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| T |
20051579 |
ctgaaattctttcactttccactattga------tcctaacatcaacattctctatcaaacaatttatgtttacaaatccaatcttgagttcccaaatga |
20051486 |
T |
|
| Q |
436 |
ccaaaaagaccctgcttgtgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcaggaaagataacaacac |
521 |
Q |
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| T |
20051485 |
ccaaaaagaccatgcttgtgtgattaaagaatccctctcaaaggctttggtttactattatcctcttgcaggaaagctaacaacac |
20051400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 419 - 522
Target Start/End: Complemental strand, 20060476 - 20060373
Alignment:
| Q |
419 |
cttgatttcccaaatgaccaaaaagaccctgcttgtgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcaggaaagataacaa |
518 |
Q |
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|||||||||| |||| |||||||||||||||||||||| ||||||||||||| |||||| | |||||| ||| |||||||||||||||||||| |||||| |
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| T |
20060476 |
cttgatttccaaaataaccaaaaagaccctgcttgtgtgatcaaagaagcaccctcaaaggttttggtttacaattatcctcttgcaggaaagctaacaa |
20060377 |
T |
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| Q |
519 |
cact |
522 |
Q |
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|||| |
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|
| T |
20060376 |
cact |
20060373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 27046690 - 27046637
Alignment:
| Q |
454 |
tgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcagg |
507 |
Q |
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|||| ||||||||||||||||||| ||||||| || ||||||||||||||||| |
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| T |
27046690 |
tgtattcaaagaagcactctcaaaggctttggattattattatcctcttgcagg |
27046637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 27100294 - 27100248
Alignment:
| Q |
461 |
aaagaagcactctcaaaagctttggtatactattatcctcttgcagg |
507 |
Q |
| |
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||||||||||||||||| |||||| | || ||||||||||||||||| |
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| T |
27100294 |
aaagaagcactctcaaaggctttgttttattattatcctcttgcagg |
27100248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 27042667 - 27042614
Alignment:
| Q |
454 |
tgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcagg |
507 |
Q |
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|||| |||||||||| |||||||| ||||||| || ||||||||||||||||| |
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| T |
27042667 |
tgtattcaaagaagcgctctcaaaggctttggattattattatcctcttgcagg |
27042614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 27086815 - 27086762
Alignment:
| Q |
454 |
tgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcagg |
507 |
Q |
| |
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|||| |||||||||| |||||||| ||||||| || ||||||||||||||||| |
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| T |
27086815 |
tgtattcaaagaagcgctctcaaaggctttggattattattatcctcttgcagg |
27086762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 454 - 507
Target Start/End: Complemental strand, 27106808 - 27106755
Alignment:
| Q |
454 |
tgtaatcaaagaagcactctcaaaagctttggtatactattatcctcttgcagg |
507 |
Q |
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|||| ||||||||||||| |||||||||||| | || ||||||||| ||||||| |
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| T |
27106808 |
tgtattcaaagaagcactttcaaaagctttgttttattattatccttttgcagg |
27106755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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