View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1354_high_2 (Length: 504)
Name: NF1354_high_2
Description: NF1354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1354_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 30 - 306
Target Start/End: Complemental strand, 36998562 - 36998286
Alignment:
| Q |
30 |
gaatacaatgatagctaactgcttcattacacacaaaataaggtttagtttatgtggtcgtatgtttgttttcctcttaagtcattgtctgtcttaagag |
129 |
Q |
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| T |
36998562 |
gaatacaatgatagctaactgcttcattacacacaaaataaggtttagtttatgtggttgtatgtttgttttcctcttaagtcattgtctgtcttaagag |
36998463 |
T |
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| Q |
130 |
gtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcaca |
229 |
Q |
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| T |
36998462 |
gtttaatttatgtttgtttcatttccttttcttttttggtctgagcttgtggatgttccaatttatttatgtacgtgggacattctgtgacatgctcaca |
36998363 |
T |
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| Q |
230 |
tggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattatacataaattatactcgct |
306 |
Q |
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| T |
36998362 |
tggagttgtaatttcactttgcttgaataaataaaaaattaggagagtttaataattatacataaattatactcgct |
36998286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 310 - 504
Target Start/End: Complemental strand, 36998251 - 36998061
Alignment:
| Q |
310 |
ttttctatttttaattaaatagaacaatgnnnnnnnnaaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacattcaaaactga |
409 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
36998251 |
ttttgtatttttaattaaatagaacaatgttttttt-aaggaattaaatagaactaatggtttcgacatagccttcttccaaagaaacgttaaaaactga |
36998153 |
T |
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| Q |
410 |
tgaggtttgccttagcagcttttcacattaagtccttcaaagccttacctgaaaacagccatatattaatgttagattttacaaccttataatgc |
504 |
Q |
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| T |
36998152 |
tgaggtttgccttagcagctttccacattaaatccttcaaagccttacctgaaaacagccatatat---tgttagattttacaaccttattatgc |
36998061 |
T |
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