View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1354_low_3 (Length: 409)
Name: NF1354_low_3
Description: NF1354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1354_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 106 - 380
Target Start/End: Complemental strand, 35089563 - 35089289
Alignment:
| Q |
106 |
aagtcataccttttagtatcatacagaatctttacgaaaatcattatgtgctaaaaatttcagtg--agtgtgaaaataatgaattttgagactattgat |
203 |
Q |
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| T |
35089563 |
aagtcataccttttagtatcatacagaatctttatgaaaatcattatgcgctaaaaattttagtgtgagtgtgaaaataatgaattttgagactattgat |
35089464 |
T |
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| Q |
204 |
tttgatggatgaatccaagaatattatacactataccctcttaaagaaaggttgaatatttgaagtgagactaaaaagctgagcaccaaaaaagatagaa |
303 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
35089463 |
tttgatggatgaatccaagaatattatacacca--ccctcttaaagaaaggttgaatatttgaagtgagactaaaaagttgagcaccaaaaaagatagaa |
35089366 |
T |
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| Q |
304 |
gatatgaaaatattataggaacattcaagagcaagagggtgaaagagggtgtagaaagctaagaagatccaatagag |
380 |
Q |
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| T |
35089365 |
gatatgaaaatattataggaacattcaagagcaagagggtgaaagagggtgtagaaagctaagaagatccaatagag |
35089289 |
T |
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