View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1354_low_8 (Length: 299)
Name: NF1354_low_8
Description: NF1354
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1354_low_8 |
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| [»] scaffold0867 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 36 - 293
Target Start/End: Original strand, 22070620 - 22070877
Alignment:
| Q |
36 |
tcacatggtggctttgatttgaatttgattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtata |
135 |
Q |
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| T |
22070620 |
tcacatggtggctttgatttgaatttgattatacttgagtgattatgtatttggtcttgacaacatttttaacaaaactgaagcatggtatacaggtata |
22070719 |
T |
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| Q |
136 |
gtatatcaaaatatacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaata |
235 |
Q |
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| T |
22070720 |
gtatatcaaaatatacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagtatgaata |
22070819 |
T |
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| Q |
236 |
tatttttgggatatagaatttgatttcaacagcataacccccatgttgtctgtggtgc |
293 |
Q |
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| T |
22070820 |
tatttttgggatatagaatttgatttcaacaaaataacccccatgttgcctttggtgc |
22070877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 229
Target Start/End: Original strand, 22082172 - 22082247
Alignment:
| Q |
149 |
tacagatattatgcccaaataattgaatgatcctatttcagtttttaattagagcttgattatctgtcctaaatttaagta |
229 |
Q |
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| T |
22082172 |
tacagatattatgcccaaataaatgaatgatcctatttc-gttgttaa----agcatgaatatctgtcctaaatttaagta |
22082247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 22064155 - 22064211
Alignment:
| Q |
36 |
tcacatggtggctttgatttgaatttgattata--cttgagtgattatgtatttggt |
90 |
Q |
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| T |
22064155 |
tcacatggtggctttgatttgaatttgattatatttttgagtgattatgtacttggt |
22064211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 243
Target Start/End: Complemental strand, 660602 - 660556
Alignment:
| Q |
197 |
ttagagcttgattatctgtcctaaatttaagtatgaatatatttttg |
243 |
Q |
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| T |
660602 |
ttagaccttgattatctgtcatgaatttaagtatgaatatatttttg |
660556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 22101009 - 22101058
Alignment:
| Q |
39 |
catggtggctttgatttgaatttgattata--cttgagtgattatgtatt |
86 |
Q |
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| T |
22101009 |
catggtggatttgatttgaatttgattatatttttgagtgattatgtatt |
22101058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 4223 - 4174
Alignment:
| Q |
39 |
catggtggctttgatttgaatttgattata--cttgagtgattatgtatt |
86 |
Q |
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| T |
4223 |
catggtggatttgatttgaatttgattatatttttgagtgattatgtatt |
4174 |
T |
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