View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355-INSERTION-1 (Length: 408)

Name: NF1355-INSERTION-1
Description: NF1355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355-INSERTION-1
NF1355-INSERTION-1
[»] chr8 (2 HSPs)
chr8 (7-408)||(26797749-26798157)
chr8 (235-273)||(14955263-14955301)
[»] chr1 (3 HSPs)
chr1 (240-307)||(49899080-49899147)
chr1 (240-307)||(7845152-7845219)
chr1 (240-287)||(10483284-10483331)
[»] chr6 (1 HSPs)
chr6 (240-273)||(31535696-31535729)
[»] chr4 (3 HSPs)
chr4 (235-300)||(38868845-38868910)
chr4 (252-307)||(36363568-36363623)
chr4 (243-307)||(33095268-33095332)
[»] chr7 (1 HSPs)
chr7 (240-307)||(28299689-28299756)
[»] chr2 (2 HSPs)
chr2 (240-303)||(752199-752262)
chr2 (240-290)||(41311710-41311760)
[»] chr3 (1 HSPs)
chr3 (235-271)||(42983905-42983941)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 408
Target Start/End: Complemental strand, 26798157 - 26797749
Alignment:
Q  7 aacatcacctttgtatgtgtatacaagtattttcgccaatggtgtaaaggacaatgatgatattttaggggttttttctttgatcttttacaccatcact 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26798157 aacatcacctttgtatgtgtatacaagtattttcgccaatggtgtaaaggacaacgatgatattttaggggttttttctttgatcttttacaccatcact 26798058  T
Q  107 cttgtaactcttgttaagtatgtattcatcgtcttgcgtgccactgataatggggacggtaagcatgca--------tgcaaactacgtatattta---- 194  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||        |||||||||||||||||||        
T  26798057 cttgtaactcttgttaagtatgtattcatcgtcttgcgtgctactgataatggggacggtaagcatgcatgcatgcgtgcaaactacgtatatttatttc 26797958  T
Q  195 atttttaggttttgctaacgaatgctctgaggatagatagaaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgc 294  Q
    |||||||||| |||||||| |||||||||||    ||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||||||||   |    
T  26797957 atttttaggtcttgctaacaaatgctctgag----gatagaaaattactttttaaacttttaatgtgttaaatgcatcagttccaaaacaaaattttctc 26797862  T
Q  295 tttagactttttagggcacttgttagcatttccttcattttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttagg 394  Q
    ||||||| ||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26797861 tttagacattttacggcacttgttaacatttcctt-attttttcaatttaatcttctggttttgcaacatatataataaagaactactactatttttagg 26797763  T
Q  395 agggacttttgctt 408  Q
    ||||||||||||||    
T  26797762 agggacttttgctt 26797749  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 14955263 - 14955301
Alignment:
Q  235 aaagctactttttaaactttcaatgtgttaaatgcatca 273  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  14955263 aaagttactttttaaactttcaatgtgttgaatgcatca 14955301  T

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Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 240 - 307
Target Start/End: Original strand, 49899080 - 49899147
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 307  Q
    ||||||| ||| |||||||||||| ||||||||| ||| |||||||| ||||||||||||||||||||    
T  49899080 tacttttcaaaatttcaatgtgttgaatgcatcatttccaaaacaaagtttctgctttagacttttta 49899147  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 7845219 - 7845152
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 307  Q
    ||||||||||||||| ||| |||||||||||||  | | |||||||||||||| ||||||||||||||    
T  7845219 tactttttaaacttttaatatgttaaatgcatccttactaaaacaaaatttcttctttagacttttta 7845152  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 287
Target Start/End: Complemental strand, 10483331 - 10483284
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaa 287  Q
    ||||||| ||||||||||||| |||||||||||| ||| |||||||||    
T  10483331 tacttttaaaactttcaatgtattaaatgcatcatttctaaaacaaaa 10483284  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 273
Target Start/End: Complemental strand, 31535729 - 31535696
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatca 273  Q
    ||||||||||||||||||||||||||||||||||    
T  31535729 tactttttaaactttcaatgtgttaaatgcatca 31535696  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 300
Target Start/End: Complemental strand, 38868910 - 38868845
Alignment:
Q  235 aaagctactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttaga 300  Q
    |||| |||||||||||||||||||||||| ||||||||| | | || ||||||||||  |||||||    
T  38868910 aaagttactttttaaactttcaatgtgttgaatgcatcattcccaagacaaaatttcctctttaga 38868845  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 252 - 307
Target Start/End: Complemental strand, 36363623 - 36363568
Alignment:
Q  252 tttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 307  Q
    |||||||||||| ||||||||| | | |||||||||||||| ||||| ||||||||    
T  36363623 tttcaatgtgttgaatgcatcaatcccaaaacaaaatttcttctttaaacttttta 36363568  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 307
Target Start/End: Original strand, 33095268 - 33095332
Alignment:
Q  243 tttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 307  Q
    ||||||||| |||||| |||||||||||||| ||| |  ||||||||||| | ||| ||||||||    
T  33095268 tttttaaacattcaatatgttaaatgcatcatttctatgacaaaatttcttccttaaacttttta 33095332  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 307
Target Start/End: Complemental strand, 28299756 - 28299689
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagacttttta 307  Q
    ||||||||||| |||||||   |||||||||||| ||| |||||||||||| | ||||| ||||||||    
T  28299756 tactttttaaaatttcaatacattaaatgcatcatttctaaaacaaaatttattctttaaacttttta 28299689  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 303
Target Start/End: Original strand, 752199 - 752262
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaatttctgctttagactt 303  Q
    |||||||| || |||||||||||| ||||||||| | | || ||||||||||| ||||||||||    
T  752199 tactttttcaagtttcaatgtgttgaatgcatcaatcccaagacaaaatttcttctttagactt 752262  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 41311760 - 41311710
Alignment:
Q  240 tactttttaaactttcaatgtgttaaatgcatcagttcgaaaacaaaattt 290  Q
    ||||||||||||||||||| |||||||||||| | ||  ||||||||||||    
T  41311760 tactttttaaactttcaatttgttaaatgcataattttcaaaacaaaattt 41311710  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 42983941 - 42983905
Alignment:
Q  235 aaagctactttttaaactttcaatgtgttaaatgcat 271  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  42983941 aaagttactttttaaattttcaatgtgttaaatgcat 42983905  T

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