View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355-INSERTION-4 (Length: 321)

Name: NF1355-INSERTION-4
Description: NF1355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355-INSERTION-4
NF1355-INSERTION-4
[»] chr5 (1 HSPs)
chr5 (7-321)||(26557648-26557966)


Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 26557648 - 26557966
Alignment:
Q  7 aataaaaatcttaacaacagtatgtaaatatcgaacctttttgtgcattatgtttttcgtcttcaaacgattccatccacaatatttcatgtcactgttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26557648 aataaaaatcttaacaacagtatgtaaatatcgaacctttttgtgcattatgtttttcgtcttcaaacgattccatccacaatatttcatgtcactgttt 26557747  T
Q  107 tgctcttcaattgacatatcaaggtgtggattctttcatttataagattatgtgtatttttacacgatcatagacattttcaccaagcaagcactattga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26557748 tgctcttcaattgacatatcaaggtgtggattctttcatttataagattatgtgtatttttacacgatcatagacattttcaccaagcaagcactattga 26557847  T
Q  207 caat----ttcaagttgttgaaagacaatgactgttgattcttcttgataatggcaacattattacaaatttcaattagtaatctattagtcattgtagg 302  Q
    ||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26557848 caattaacttcaagttgttgaaagacaatgactgttgattcttcttgataatggcaacattattacgaatttcaattagtaatctattagtcattgtagg 26557947  T
Q  303 tgaattcaataataggagt 321  Q
    |||||||||||||||||||    
T  26557948 tgaattcaataataggagt 26557966  T

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