View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1355-INSERTION-6 (Length: 200)
Name: NF1355-INSERTION-6
Description: NF1355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1355-INSERTION-6 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 200
Target Start/End: Original strand, 33189685 - 33189879
Alignment:
| Q |
6 |
cattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgcctcttggtctgaaggattttgtgtactcgtcgttaattacaagattagcctt |
105 |
Q |
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| T |
33189685 |
cattgcggtggtacacactgttgttgtcgtgctcacgcaggacatcgccttttggtctgaaggattttgtctactcgttgttaattacaggattagcctt |
33189784 |
T |
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| Q |
106 |
ctggccgatccagaacacaaatattgttaattgtacctaatttgtaattagatctaatataaaaacttaacaatactaatattgagttggagtat |
200 |
Q |
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| T |
33189785 |
ctggccgatccagaacacaaatattgttaattgtacctaatttgtaattagacctaatataaaaacttaacaatactaatattgagttggagtat |
33189879 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 126 - 193
Target Start/End: Original strand, 33189907 - 33189974
Alignment:
| Q |
126 |
atattgttaattgtacctaatttgtaattagatctaatataaaaacttaacaatactaatattgagtt |
193 |
Q |
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| T |
33189907 |
atattgttaattgtatcttattcttaattagacctaatataaaaacttaacaatactaatattaagtt |
33189974 |
T |
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