View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1355-INSERTION-8 (Length: 399)

Name: NF1355-INSERTION-8
Description: NF1355
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1355-INSERTION-8
NF1355-INSERTION-8
[»] chr6 (7 HSPs)
chr6 (6-399)||(27869617-27870010)
chr6 (238-321)||(28028538-28028621)
chr6 (238-284)||(21418478-21418524)
chr6 (238-284)||(34444811-34444857)
chr6 (238-299)||(10338180-10338242)
chr6 (258-299)||(6384009-6384050)
chr6 (238-299)||(6691557-6691618)
[»] chr3 (9 HSPs)
chr3 (238-299)||(42799754-42799815)
chr3 (238-321)||(40268497-40268580)
chr3 (238-299)||(3055002-3055064)
chr3 (238-299)||(27093367-27093429)
chr3 (238-299)||(15034353-15034414)
chr3 (238-299)||(18316505-18316566)
chr3 (238-299)||(34844379-34844440)
chr3 (238-299)||(53863874-53863935)
chr3 (241-296)||(32651447-32651503)
[»] chr1 (11 HSPs)
chr1 (238-396)||(37046993-37047152)
chr1 (238-299)||(15581148-15581209)
chr1 (238-284)||(52116803-52116849)
chr1 (260-309)||(47360510-47360559)
chr1 (238-321)||(39964513-39964596)
chr1 (238-299)||(6122802-6122864)
chr1 (238-299)||(19528333-19528395)
chr1 (238-284)||(31794286-31794332)
chr1 (238-299)||(24857837-24857898)
chr1 (241-302)||(34228885-34228946)
chr1 (238-298)||(48400180-48400240)
[»] chr4 (15 HSPs)
chr4 (238-366)||(37455577-37455706)
chr4 (238-299)||(37980154-37980215)
chr4 (238-289)||(29195103-29195154)
chr4 (238-284)||(19238599-19238645)
chr4 (238-299)||(49576900-49576962)
chr4 (238-299)||(25434665-25434725)
chr4 (238-299)||(38206132-38206193)
chr4 (238-299)||(42281240-42281301)
chr4 (238-299)||(56409959-56410020)
chr4 (238-296)||(46545719-46545778)
chr4 (242-299)||(4249189-4249247)
chr4 (238-299)||(37109357-37109419)
chr4 (239-285)||(39030134-39030180)
chr4 (261-334)||(5998659-5998732)
chr4 (238-295)||(21344825-21344882)
[»] chr2 (9 HSPs)
chr2 (238-299)||(37480083-37480145)
chr2 (240-299)||(23052529-23052589)
chr2 (238-296)||(7799044-7799103)
chr2 (240-299)||(26482103-26482162)
chr2 (238-299)||(42327401-42327463)
chr2 (238-299)||(3697406-3697467)
chr2 (258-299)||(6099525-6099566)
chr2 (238-299)||(16525186-16525247)
chr2 (261-309)||(7250260-7250308)
[»] chr7 (16 HSPs)
chr7 (238-299)||(25956299-25956360)
chr7 (238-328)||(41487370-41487458)
chr7 (238-284)||(5273612-5273658)
chr7 (238-284)||(27776180-27776226)
chr7 (238-284)||(43590915-43590961)
chr7 (258-299)||(23330874-23330915)
chr7 (238-333)||(38374571-38374667)
chr7 (240-295)||(18847433-18847488)
chr7 (238-299)||(5579240-5579302)
chr7 (238-284)||(23301624-23301670)
chr7 (238-299)||(26459416-26459478)
chr7 (238-299)||(29385749-29385811)
chr7 (238-299)||(33181216-33181278)
chr7 (238-284)||(35513474-35513520)
chr7 (238-299)||(48125181-48125242)
chr7 (238-321)||(22760871-22760955)
[»] chr8 (18 HSPs)
chr8 (238-328)||(18897174-18897265)
chr8 (239-321)||(26168961-26169041)
chr8 (238-299)||(19703493-19703555)
chr8 (238-299)||(26688873-26688935)
chr8 (239-321)||(29206354-29206436)
chr8 (238-299)||(6530815-6530876)
chr8 (238-295)||(22268944-22269001)
chr8 (239-308)||(22779664-22779733)
chr8 (238-299)||(3624588-3624650)
chr8 (238-284)||(6436577-6436623)
chr8 (238-299)||(11819784-11819846)
chr8 (238-299)||(27750738-27750800)
chr8 (238-284)||(29431019-29431065)
chr8 (127-157)||(42684124-42684154)
chr8 (238-299)||(44780120-44780182)
chr8 (241-328)||(968373-968461)
chr8 (258-299)||(40136969-40137010)
chr8 (238-297)||(2203500-2203560)
[»] chr5 (6 HSPs)
chr5 (238-299)||(16172990-16173051)
chr5 (240-284)||(16457820-16457864)
chr5 (258-321)||(32340321-32340384)
chr5 (238-299)||(892480-892542)
chr5 (238-299)||(25627065-25627127)
chr5 (258-299)||(15485426-15485467)
[»] scaffold0223 (2 HSPs)
scaffold0223 (127-157)||(10217-10247)
scaffold0223 (127-157)||(10413-10443)
[»] scaffold0189 (1 HSPs)
scaffold0189 (238-299)||(17730-17791)


Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 399
Target Start/End: Complemental strand, 27870010 - 27869617
Alignment:
Q  6 cacctcacacattccgagataaaaaagatcgtttaccctattaattttaatcctcaaattcaaatatatatgaagcgttatcactatagtccatgaatgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27870010 cacctcacacattccgagataaaaaagatcgtttaccctattaattttaatcctcaaattcaaatatatatgaagcgttatcactatagtccatgaatgt 27869911  T
Q  106 atcgaaattataaaatatatgcaagtgtctcttttgttagtaattttatggaaaaaatcaacgaacgttcgtggactaaactgattaactgaaaacacat 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27869910 atcgaaattataaaatatatgcaagtgtctcttttgttagtaattttatggaaaaaatcaacgaacgttcgtggactaaactgattaactgaaaacacat 27869811  T
Q  206 ttgtggactaaaatgactatnnnnnnnntacatgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtc 305  Q
    ||||||||||||||||||||        ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27869810 ttgtggactaaaatgactataaaaaaaatacatgggttgacctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtc 27869711  T
Q  306 ctcctgatgccaatttatgtggggtagtcattatagagttttgtttggctttaaatggggctctagcaagtggattgtgggattggtcccccat 399  Q
    ||||| |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27869710 ctcctaatgccaatttatgtgggcaagtcattatagagttttgtttggctttaaatggggctctagcaagtggattgtgggattggtcccccat 27869617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 28028538 - 28028621
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    ||||||||||||||||| | | |||||||| || ||||| |||||||||||| ||||| ||| || ||  ||||||||||||||    
T  28028538 tgggttggcctggtggtgttgacttgggacctttgagtgagctcctctcaaggtctcatgttcgattctccctgatgccaattt 28028621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 21418478 - 21418524
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  21418478 tgggttggcctggtggtattggcttgggacttgggagtgtgctcctc 21418524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 34444811 - 34444857
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| | |||||||| ||||||||||||||||    
T  34444811 tgggttggcctggtggtattgacttgggaccttagagtgtgctcctc 34444857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 10338242 - 10338180
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||| ||||||||| |||||||||| |  |||||||||||| |||||| |||||||||    
T  10338242 tgggttggcatggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggtt 10338180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 6384050 - 6384009
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| || |||||||||||||||||| |||||||||    
T  6384050 ggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 6384009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 6691618 - 6691557
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | | |||  ||| || |||||||||||||||||| |||||||||    
T  6691618 tgggttggcctggtggtgttgactttagaccttggagtgtgctcctctcaaggtctcaggtt 6691557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 42799815 - 42799754
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| || |||||||||||||||||| |||||||||    
T  42799815 tgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 42799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 40268497 - 40268580
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    |||||| |||||||||| | |||||||||| || ||||| |||||||| ||| ||||||||| || ||  || |||||||||||    
T  40268497 tgggtttgcctggtggtgttggcttgggaccttggagtgggctcctcttaaggtctcaggttcgattctccccgatgccaattt 40268580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 3055002 - 3055064
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| || ||| ||||| || ||||||||||||||||    
T  3055002 tgggttggcctggtggtgttggcttgggaccttggagcgtgcttctcctcaagatctcaggtt 3055064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 27093429 - 27093367
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| ||||||| ||||  |||||||||||| |||||| |||||||||    
T  27093429 tgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtt 27093367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 15034353 - 15034414
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | | |||||||| || ||| ||| |||||||||| |||||||||    
T  15034353 tgggttggcctggtggtgttgccttgggaccttggagggtgatcctctcaaggtctcaggtt 15034414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 18316566 - 18316505
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||| ||||||||   |||||||||| || |||||||||||||||||| ||| |||||    
T  18316566 tgggttggtctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtcttaggtt 18316505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 34844379 - 34844440
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||| ||||||| | | |||||| ||| || |||||||||||||||||| |||||||||    
T  34844379 tgggttgccctggtgttgttggcttgagaccttggagtgtgctcctctcaaggtctcaggtt 34844440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 53863935 - 53863874
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||| ||||||| | | |||||||||| || |||||||||||||||||| ||| |||||    
T  53863935 tgggttgtcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtcttaggtt 53863874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 296
Target Start/End: Complemental strand, 32651503 - 32651447
Alignment:
Q  241 gttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcag 296  Q
    |||||||| ||||||| |||||||||| |  |||||||||||| |||||||||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcag 32651447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 238 - 396
Target Start/End: Original strand, 37046993 - 37047152
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaatttatgtggggtagtcatt 337  Q
    |||||||| |||||||| | |||||||||| || |||||||||||||||||| ||||||||| || ||| |||| | | |||||  ||||| |||||  |    
T  37046993 tgggttggtctggtggtgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtttgattccccctggtacaaattttggtgggctagtccat 37047092  T
Q  338 atagagttttg-tttggctttaaatggggctctagcaagtggattgtgggattggtcccc 396  Q
    | |||| |||| | | |||||||||||||| |   ||||||||  |||||||||| ||||    
T  37047093 acagagctttgctctagctttaaatggggcccccacaagtggacggtgggattggacccc 37047152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 15581209 - 15581148
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| || |||||||||||||| ||| |||||||||    
T  15581209 tgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctaaaggtctcaggtt 15581148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 52116849 - 52116803
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  52116849 tgggttggcctggtggtattggcttgggacttgggagtgtgctcctc 52116803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 47360559 - 47360510
Alignment:
Q  260 cttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcc 309  Q
    |||||||| || |||||||||||||||||||||||||||| || ||||||    
T  47360559 cttgggaccttggagtgtgctcctctcaagatctcaggttcgaatcctcc 47360510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 39964513 - 39964596
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    ||||||||||| | ||| | |||||| ||| || |||||||||||||||||| ||||||||| || |||  ||| |||||||||    
T  39964513 tgggttggcctagaggtgttggcttgcgaccttggagtgtgctcctctcaaggtctcaggtttgattccctctggtgccaattt 39964596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 6122802 - 6122864
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||| ||| ||||||| ||||||||||||  |||||||||||| |||||| |||||||||    
T  6122802 tgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 6122864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 19528395 - 19528333
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||||| |||||||||  |  |||||||||||| |||||| |||||||||    
T  19528395 tgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggtt 19528333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 31794332 - 31794286
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||| ||||||| ||||||||||||  |||||||||||||    
T  31794332 tgggttggcctagtggtattggcttgggacttgggagtgtgctcctc 31794286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 24857898 - 24857837
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||| ||||| || ||||| ||| |||||||| |||||||||    
T  24857898 tgggttggcctggtggtgttggctagggaccttggagtgggcttctctcaagctctcaggtt 24857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 302
Target Start/End: Original strand, 34228885 - 34228946
Alignment:
Q  241 gttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttgga 302  Q
    ||||| |||||||| | |||||||||| |  ||||||| |||||||||| ||||||||||||    
T  34228885 gttggtctggtggtgttggcttgggacctcggagtgtgttcctctcaaggtctcaggttgga 34228946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 48400180 - 48400240
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggt 298  Q
    |||||||||||| |||||| |||||||||| || ||| |  ||||||||||| ||||||||    
T  48400180 tgggttggcctgatggtattggcttgggaccttggagcgcactcctctcaaggtctcaggt 48400240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 366
Target Start/End: Original strand, 37455577 - 37455706
Alignment:
Q  238 tgggttggcctggtggtatgggcttggga-ctttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaatttatgtggggtagtcat 336  Q
    ||||||||||||||||| | ||||||||| |||| |||| ||||||||||||| ||||||||| || ||| |||| |||||||||   |||| || ||      
T  37455577 tgggttggcctggtggtgttggcttgggacctttggagtatgctcctctcaaggtctcaggttcgattcc-cctggtgccaatttcaatgggctaatcca 37455675  T
Q  337 tatagagttttg-tttggctttaaatggggc 366  Q
    ||||||| |||| | ||||||||||||||||    
T  37455676 tatagagatttgctctggctttaaatggggc 37455706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 37980215 - 37980154
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||| | | |||||||||| || |||||||||||||||||| |||||||||    
T  37980215 tgggttggcctggtgatgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 37980154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 29195103 - 29195154
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaag 289  Q
    ||||||||||||||||| | |||||||||| || ||||||||||||||||||    
T  29195103 tgggttggcctggtggtgttggcttgggaccttggagtgtgctcctctcaag 29195154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 19238645 - 19238599
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  19238645 tgggttggcctggtggtattggcttgggacttgggagtgtgctcctc 19238599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 49576962 - 49576900
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||||| ||||| ||||||  |||||||||||| |||||| |||||||||    
T  49576962 tgggttggcctggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggtt 49576900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 25434725 - 25434665
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| || ||||||||| |||||||| |||||||||    
T  25434725 tgggttggcctggtggtgt-ggcttgggaccttggagtgtgcttctctcaaggtctcaggtt 25434665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 38206193 - 38206132
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||| |||||||||   |||||||||| || |||||||||||||||||| |||||||||    
T  38206193 tgggttgacctggtggtgctggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 38206132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 42281301 - 42281240
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| |||||| | |||||||||| ||  ||||||||||||||||| |||||||||    
T  42281301 tgggttggccaggtggtgttggcttgggaccttgtagtgtgctcctctcaaggtctcaggtt 42281240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 56409959 - 56410020
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||| |||||||||| | | |||||||||| || |||||||||||||||||| |||||||||    
T  56409959 tgggctggcctggtgctgttggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 56410020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 296
Target Start/End: Original strand, 46545719 - 46545778
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcag 296  Q
    ||||||||||| ||||||| |||||| ||| | ||||||||||||| |||||||||||||    
T  46545719 tgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcag 46545778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 299
Target Start/End: Original strand, 4249189 - 4249247
Alignment:
Q  242 ttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||| ||||||| ||||||||| ||| |||||||||||| |||||| |||||||||    
T  4249189 ttggcctagtggtataggcttgggattttggagtgtgctcctcctcaaggtctcaggtt 4249247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 37109419 - 37109357
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| |  |||||||||||| |||||| |||||||||    
T  37109419 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt 37109357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 39030180 - 39030134
Alignment:
Q  239 gggttggcctggtggtatgggcttgggactttagagtgtgctcctct 285  Q
    |||||||||||||||| | |||||||||| || ||||||||||||||    
T  39030180 gggttggcctggtggtgttggcttgggaccttggagtgtgctcctct 39030134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 5998732 - 5998659
Alignment:
Q  261 ttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaatttatgtggggtagtc 334  Q
    ||||||| || |||||||||||||||||| |||||  || || |||||||  ||||||||| |||||| |||||    
T  5998732 ttgggaccttggagtgtgctcctctcaaggtctcacattcgaatcctccttgtgccaatttttgtgggctagtc 5998659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 21344825 - 21344882
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctca 295  Q
    |||||||||||| || | | |||||||||| || |||||||||||||||||| |||||    
T  21344825 tgggttggcctgatgatgttggcttgggaccttggagtgtgctcctctcaaggtctca 21344882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 37480083 - 37480145
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||||| |||||||||| | ||||||||||||| |||||| |||||||||    
T  37480083 tgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggtt 37480145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 299
Target Start/End: Complemental strand, 23052589 - 23052529
Alignment:
Q  240 ggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||| ||||||||||||  ||||||||| || |||||| |||||||||    
T  23052589 ggttggcctggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggtt 23052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 238 - 296
Target Start/End: Complemental strand, 7799103 - 7799044
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcag 296  Q
    ||||||| ||||||||||| ||||||||||||  |||||||||||| ||| |||||||||    
T  7799103 tgggttgtcctggtggtattggcttgggacttgggagtgtgctcctcctcgagatctcag 7799044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 26482103 - 26482162
Alignment:
Q  240 ggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| |||| | |||||||||| |  |||||||||||||||||| |||||||||    
T  26482103 ggttggcctgatggtgttggcttgggacctaggagtgtgctcctctcaaggtctcaggtt 26482162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 42327463 - 42327401
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| |  |||||||||||| |||||| |||||||||    
T  42327463 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt 42327401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 3697467 - 3697406
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||| ||| |||||| |||||||||| || ||| |||||||||||||| |||| ||||    
T  3697467 tgggttggtctgatggtattggcttgggaccttggagagtgctcctctcaaggtctctggtt 3697406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 6099566 - 6099525
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| || |||||||||||||||||| |||||||||    
T  6099566 ggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 6099525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 16525186 - 16525247
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||||| |||| | |||||||||| || ||||||||  |||||||| |||||||||    
T  16525186 tgggttggcctgatggtgttggcttgggacgttggagtgtgcgactctcaaggtctcaggtt 16525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 7250260 - 7250308
Alignment:
Q  261 ttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcc 309  Q
    ||||||| || |||||||||||||||||||||||| ||| || ||||||    
T  7250260 ttgggaccttggagtgtgctcctctcaagatctcaagtttgattcctcc 7250308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 25956360 - 25956299
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| || |||||||||||||||||| ||| |||||    
T  25956360 tgggttggcctagtggtattggcttgggaccttggagtgtgctcctctcaaggtcttaggtt 25956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 41487370 - 41487458
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaatttatgtggg 328  Q
    ||||||||||||||||||| ||||||||||||  |||||| |||  |||||| ||||||||| || || ||| | |||||||||| |||||    
T  41487370 tgggttggcctggtggtattggcttgggacttgggagtgttctc--ctcaaggtctcaggttcgattcttcccggtgccaatttaggtggg 41487458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 5273658 - 5273612
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||| | |||||||||| ||||||||||||||||    
T  5273658 tgggttggcctggtggtgttggcttgggaccttagagtgtgctcctc 5273612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 27776180 - 27776226
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    |||||||||||||||||||  ||||||||||| ||||||||||||||    
T  27776180 tgggttggcctggtggtatacgcttgggacttgagagtgtgctcctc 27776226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 43590915 - 43590961
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  43590915 tgggttggcctggtggtattggcttgggacttgggagtgtgctcctc 43590961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 23330915 - 23330874
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||| |||||||||||||||||||||| |||||||||    
T  23330915 ggcttgggattttagagtgtgctcctctcaaggtctcaggtt 23330874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 333
Target Start/End: Complemental strand, 38374667 - 38374571
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggttggagtcctcctgatgccaatttatgtggggtagt 333  Q
    ||||||||| ||||||| | |||||||||| ||||||||||||||| |||||| ||| ||||| || ||  || | |||||||||| ||||| ||||    
T  38374667 tgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagt 38374571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 240 - 295
Target Start/End: Complemental strand, 18847488 - 18847433
Alignment:
Q  240 ggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctca 295  Q
    ||||||||||||||| | |||||| ||  || ||||||||||||||||||||||||    
T  18847488 ggttggcctggtggtgttggcttgagatcttcgagtgtgctcctctcaagatctca 18847433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 5579302 - 5579240
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||| ||||||||| | |||||||||| || |||||||||||| |||||| |||||||||    
T  5579302 tgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtt 5579240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 23301670 - 23301624
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||||| | ||||||||||  |||||||||||||    
T  23301670 tgggttggcctggtggtattgacttgggacttgggagtgtgctcctc 23301624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 26459478 - 26459416
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| |  |||||||||||| |||||| |||||||||    
T  26459478 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggtt 26459416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 29385811 - 29385749
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    |||||||||| | |||| | ||||||||||||| |||||||||||| |||||| |||||||||    
T  29385811 tgggttggccggatggtgttggcttgggactttggagtgtgctcctcctcaaggtctcaggtt 29385749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 33181278 - 33181216
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcc-tctcaagatctcaggtt 299  Q
    ||||||| ||| ||||||| ||||||||||||  |||||||||||  ||||||||||||||||    
T  33181278 tgggttgccctagtggtataggcttgggacttgggagtgtgctccaactcaagatctcaggtt 33181216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 35513474 - 35513520
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||| |||||||  ||||||||||| ||||||||||||||    
T  35513474 tgggttggcctagtggtatttgcttgggacttgagagtgtgctcctc 35513520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 48125242 - 48125181
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||| |||||||| | |||||||||| || |||||||||||||  ||| |||||||||    
T  48125242 tgggttggtctggtggtgttggcttgggaccttggagtgtgctcctccgaaggtctcaggtt 48125181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 321
Target Start/End: Original strand, 22760871 - 22760955
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    |||||||| |||||||||| | |||||||| |  |||||||||||| |||||| ||||||||| || ||  || |||||||||||    
T  22760871 tgggttggtctggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaattt 22760955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 328
Target Start/End: Original strand, 18897174 - 18897265
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggttggagtcctcctgatgccaatttatgtggg 328  Q
    ||||||||||| ||||| | || ||||||| ||||||||||||||| |||||| ||||| ||| || || ||||| |||||||||| |||||    
T  18897174 tgggttggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattcttcctggtgccaatttaggtggg 18897265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 321
Target Start/End: Complemental strand, 26169041 - 26168961
Alignment:
Q  239 gggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    |||||||||| ||||| ||  |||||||  || |||| ||||||||||||| ||||||||| || ||||||||||||||||||    
T  26169041 gggttggcctagtggtttg--cttgggatcttggagtttgctcctctcaaggtctcaggtttgattcctcctgatgccaattt 26168961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 19703555 - 19703493
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| | ||||||||||||| |||||| |||||||||    
T  19703555 tgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggtt 19703493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 26688873 - 26688935
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| || |||||||||||| |||||| |||||||||    
T  26688873 tgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtt 26688935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 321
Target Start/End: Original strand, 29206354 - 29206436
Alignment:
Q  239 gggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    |||||||||||||||| ||||||||| || || | |||||||||||||||| | ||||||| || || ||| || ||||||||    
T  29206354 gggttggcctggtggtgtgggcttggtaccttggggtgtgctcctctcaaggtgtcaggttcgattcttccagaagccaattt 29206436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 6530815 - 6530876
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||| | |||||||||| |  |||||||||||||||||  |||||||||    
T  6530815 tgggttggcctggtggtgttggcttgggacctaggagtgtgctcctctcaatgtctcaggtt 6530876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 22269001 - 22268944
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctca 295  Q
    ||||||||||||||||| | |||||||||| || |||||||||| ||||||| |||||    
T  22269001 tgggttggcctggtggtgttggcttgggaccttggagtgtgctcttctcaaggtctca 22268944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 22779664 - 22779733
Alignment:
Q  239 gggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctc 308  Q
    ||||| ||||||||| || |||||||||| || || ||||||||||||||| ||||||||| || |||||    
T  22779664 gggttagcctggtggcataggcttgggaccttggaatgtgctcctctcaaggtctcaggttcgaatcctc 22779733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 3624588 - 3624650
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc-tcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| |  ||||||||||||| ||||| |||||||||    
T  3624588 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggtt 3624650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 6436623 - 6436577
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||| ||||||||||| ||||||||||||  |||||||||||||    
T  6436623 tgggttgccctggtggtattggcttgggacttaggagtgtgctcctc 6436577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 11819784 - 11819846
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||| ||| ||||||| ||||||||||||  |||||||||||| |||||| |||||||||    
T  11819784 tgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 11819846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 27750738 - 27750800
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||| ||| ||||||| ||||||||||||  |||||||||||| |||||| |||||||||    
T  27750738 tgggttgccctcgtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 27750800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 29431019 - 29431065
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  29431019 tgggttggcctggcggtattggcttgggacttgggagtgtgctcctc 29431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 42684154 - 42684124
Alignment:
Q  127 caagtgtctcttttgttagtaattttatgga 157  Q
    |||||||||||||||||||||||||||||||    
T  42684154 caagtgtctcttttgttagtaattttatgga 42684124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 44780182 - 44780120
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| |||| || ||||||||||||  |||||||||||| |||||| |||||||||    
T  44780182 tgggttggcctagtggcattggcttgggacttgggagtgtgctcctcctcaaggtctcaggtt 44780120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 328
Target Start/End: Original strand, 968373 - 968461
Alignment:
Q  241 gttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggttggagtc-ctcctgatgccaatttatgtggg 328  Q
    |||||||||||||||| |||||||||| |  |||||||||||| ||| || ||||||||| || || |||| |||||||||||| |||||    
T  968373 gttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcc-gatgccaatttaggtggg 968461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 40137010 - 40136969
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| || |||||||||||||||||| |||||||||    
T  40137010 ggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 40136969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 297
Target Start/End: Original strand, 2203500 - 2203560
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcagg 297  Q
    ||||||||||| ||||||| |||||||||| |  |||||||||||| |||||| |||||||    
T  2203500 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagg 2203560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 16173051 - 16172990
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||||||| || | |||||| ||| || |||||||||||||||||| |||||||||    
T  16173051 tgggttggcctggtagtgttggcttgagaccttggagtgtgctcctctcaaggtctcaggtt 16172990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 16457820 - 16457864
Alignment:
Q  240 ggttggcctggtggtatgggcttgggactttagagtgtgctcctc 284  Q
    ||||||||||||||||| |||||||||| || |||||||||||||    
T  16457820 ggttggcctggtggtattggcttgggaccttggagtgtgctcctc 16457864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 258 - 321
Target Start/End: Complemental strand, 32340384 - 32340321
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggttggagtcctcctgatgccaattt 321  Q
    |||||||||| || |||||||||||||||||| ||| ||||| || |||| | |||||||||||    
T  32340384 ggcttgggaccttggagtgtgctcctctcaaggtcttaggttcgaatcctaccgatgccaattt 32340321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 892542 - 892480
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| |||||||||| | ||||||| ||||| |||||| |||||||||    
T  892542 tgggttggcctagtggtattggcttgggacctcagagtgtactcctcctcaaggtctcaggtt 892480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 299
Target Start/End: Original strand, 25627065 - 25627127
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcct-ctcaagatctcaggtt 299  Q
    ||||||||||| ||||||| ||||||| ||||  |||||||||||| |||||| |||||||||    
T  25627065 tgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggtt 25627127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 15485467 - 15485426
Alignment:
Q  258 ggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    |||||||||| || |||||||||||||||||| |||||||||    
T  15485467 ggcttgggaccttggagtgtgctcctctcaaggtctcaggtt 15485426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 10247 - 10217
Alignment:
Q  127 caagtgtctcttttgttagtaattttatgga 157  Q
    |||||||||||||||||||||||||||||||    
T  10247 caagtgtctcttttgttagtaattttatgga 10217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 157
Target Start/End: Complemental strand, 10443 - 10413
Alignment:
Q  127 caagtgtctcttttgttagtaattttatgga 157  Q
    |||||||||||||||||||||||||||||||    
T  10443 caagtgtctcttttgttagtaattttatgga 10413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 17791 - 17730
Alignment:
Q  238 tgggttggcctggtggtatgggcttgggactttagagtgtgctcctctcaagatctcaggtt 299  Q
    ||||||||||||||||||| ||| |  ||| || |||||| ||||||||||| |||||||||    
T  17791 tgggttggcctggtggtattggcgtaagaccttggagtgttctcctctcaaggtctcaggtt 17730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University